7ogs_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
reference	Agnarelli et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.37, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ogs_A interface=76,79,80,83,84, gngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpegak > 7ogs_B interface=76,79,80,83,84, gngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpegak
interface signature	TRCNK/TRCNK

Estimated binding specificities ?

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# IC=12.377 IC/col=1.031 n_of_columns=12

specificity:

A |   0   4  80  96  96   5   4   4  83  96  96   4
C |   0   4   4   0   0  83  83   5   4   0   0   5
G |   0  84   8   0   0   4   5  83   4   0   0  83
T |  96   4   4   0   0   4   4   4   5   0   0   4

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updated Sun Dec 15 11:32:23 2024