7ogs_EF : 3D-footprint complex

structure name	X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
reference	Agnarelli et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.37, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ogs_E interface=76,79,80,83,84, gngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpegak > 7ogs_F interface=76,79,80,84, gngklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalnKsndfeelversqldisdpykvyrivpegak
interface signature	TRCNK/TRCK

Estimated binding specificities ?

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# IC=12.742 IC/col=1.062 n_of_columns=12

specificity:

A |   0   0  78  96  96   6   0   6  78  96  96   6
C |   0   0   6   0   0  78  96   6   6   0   0   6
G |   0  96   6   0   0   6   0  78   6   0   0  78
T |  96   0   6   0   0   6   0   6   6   0   0   6

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updated Wed Sep 11 10:59:57 2024