7oot_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
reference	Agnarelli et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7oot_A interface=35,77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkHagkqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalNKsndfeelversqldisdpykvyrivpega > 7oot_B interface=74,77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpega
interface signature	HRCNK/TRCNK

Estimated binding specificities ?

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# IC=10.792 IC/col=0.981 n_of_columns=11

specificity:

A |   3   0   3   3   0   0   3   3  10  12  96
C |   1  96   3  85   0   0   5   3   6  65   0
G |   3   0   5   3  96  96   3   3  15   6   0
T |  89   0  85   5   0   0  85  87  65  13   0

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updated Sun Dec 15 11:50:38 2024