7oot_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
reference	Agnarelli et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7oot_A interface=77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalNKsndfeelversqldisdpykvyrivpega > 7oot_B interface=74,77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpega
interface signature	RCNK/TRCNK

Estimated binding specificities ?

readout + contact

# IC=11.135 IC/col=1.012 n_of_columns=11

specificity:

A |   0  11  71  85  80   0   0   0  80   0  81
C |   0   5  10   5   6  96  96   0   6   0   5
G |   0  80   5   5   5   0   0  96   5  96   5
T |  96   0  10   1   5   0   0   0   5   0   5

scan!

home
updated Wed Jan 7 07:17:55 2026