7oot_AB : 3D-footprint complex

structure name	X-RAY STRUCTURE OF INTERFERON REGULATORY FACTOR 4 DNA BINDING DOMAIN BOUND TO AN INTERFERON-STIMULATED RESPONSE ELEMENT
reference	Agnarelli et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=2.25, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7oot_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7oot_A interface=77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwktrlRCalNKsndfeelversqldisdpykvyrivpega > 7oot_B interface=74,77,78,81,82, gklrqwlidqidsgkypglvweneeksifripwkhagkqdynreedaalfkawalfkgkfregidkpdpptwkTrlRCalNKsndfeelversqldisdpykvyrivpega
interface signature	RCNK/TRCNK

Estimated binding specificities ?

readout + contact

# IC=11.091 IC/col=1.008 n_of_columns=11

specificity:

A |   0  11  76  81  81   0   0   0  86   0  81
C |   0   4   9   4   4  96  96   0   4   0   4
G |   0  72   4   7   4   0   0  96   4  96   4
T |  96   9   7   4   7   0   0   0   2   0   7

scan!

home
updated Wed Sep 11 11:18:22 2024