7oz3_ABCD : 3D-footprint complex

structure name	S. AGALACTIAE BUSR IN COMPLEX WITH ITS BUSA-PROMOTOR DNA
source	STREPTOCOCCUS AGALACTIAE
experiment	NMR
structural superfamily	TrkA C-terminal domain-like;"Winged helix" DNA-binding domain;
reference complex	7b5y_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7oz3_A interface=31,43,44,46,47,62, ivtskyqkiavavaqriangdyevgeklksRttiastfnvspETaRKglniladlqiltlkHgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnl > 7oz3_B interface=31,41,43,44,46,47,62, ivtskyqkiavavaqriangdyevgeklksRttiastfnvSpETaRKglniladlqiltlkHgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr > 7oz3_C interface=30,39,40, tskyqkiavavaqriangdyevgeklksrTtiastfnvSPetarkglniladlqiltlkhgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr > 7oz3_D interface=27,36,37, yqkiavavaqriangdyevgeklksrTtiastfnvSPetarkglniladlqiltlkhgsgaiilskekaieflnqyetshsvailkgkirdnikaqqqemeelatlvddfllqtravskqyplapyeiivsedsehlgksigelnvwhqtgativaiehegkfivspgpfsvieqgdhiffvgdedvyarmktyfnlr
interface signature	RETRKH/RSETRKH/TSP/TSP

Estimated binding specificities ?

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# IC=16.931 IC/col=0.564 n_of_columns=30

specificity:

A |  96   0  96   0   0  96  24  56  24  24  24  24  24  24  24  24  24  24  24  24  24   8  16  24   0   0   0   0   0   0
C |   0   0   0  96  96   0  24   8  24  24  24  24  24  24  24  24  24  24  24  24  24   8  16  24   0   0   0   0  96   0
G |   0  96   0   0   0   0  24  16  24  24  24  24  24  24  24  24  24  24  24  24  24   8  16  24   0  96  96   0   0   0
T |   0   0   0   0   0   0  24  16  24  24  24  24  24  24  24  24  24  24  24  24  24  72  48  24  96   0   0  96   0  96

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updated Wed Sep 11 11:31:53 2024