7pik_ABC : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
reference complex	7pik_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_A interface=115,116,117,118,120,143,150, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdyknSgapgerRs > 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka > 7pik_C interface=34,116,117,120,140,143,150,205,208,209, mwqinevvlfdndpyrilaiedgqvvwmqisadKgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvtKAtvYkllrrywqrgqtpnalipdYknSgapgerRgtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfRYfydreypkalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgiaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwlqrstqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnkanakqdeltkrreleafiqqtiqkankl
interface signature	TKATYSR/TKATYYSRIRRY/KKAYYSRRRY

Estimated binding specificities ?

readout + contact

# IC=26.270 IC/col=0.486 n_of_columns=54

specificity:

A |   0  24  24  24  24  24  24  24  24  24   1   0  94  24   0   0   5  24  81  24  24   0   1  24  24  24  24  24  24   7  24  69   0  24   1   0   0   0  24  24  24   0  24  24  24  24  24  24  24   4   1   0   0  90
C |   0  24  24  24  24  24  24  24  24  24   1   0   0  24   0   0  12  24   5  24  24   0   1  24  24  24  24  24  24  83  24   9  86  24   0   0   0   0  24  24  24   0  24  24  24  24  24  24  24  90  87   0   0   4
G |  96  24  24  24  24  24  24  24  24  24   1   0   1  24   0  96   1  24   7  24  24  96   4  24  24  24  24  24  24   5  24   9   1  24   0   0  96   0  24  24  24   2  24  24  24  24  24  24  24   1   1   0   0   1
T |   0  24  24  24  24  24  24  24  24  24  93  96   1  24  96   0  78  24   3  24  24   0  90  24  24  24  24  24  24   1  24   9   9  24  95  96   0  96  24  24  24  94  24  24  24  24  24  24  24   1   7  96  96   1

scan!

home
updated Sun Dec 15 12:44:11 2024