7pik_ABC : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
reference complex	7pik_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_A interface=115,116,117,118,120,143,150, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdyknSgapgerRs > 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka > 7pik_C interface=34,116,117,120,140,143,150,205,208,209, mwqinevvlfdndpyrilaiedgqvvwmqisadKgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvtKAtvYkllrrywqrgqtpnalipdYknSgapgerRgtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfRYfydreypkalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgiaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwlqrstqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnkanakqdeltkrreleafiqqtiqkankl
interface signature	TKATYSR/TKATYYSRIRRY/KKAYYSRRRY

Estimated binding specificities ?

readout + contact

# IC=26.158 IC/col=0.484 n_of_columns=54

specificity:

A |   0  24  24  24  24  24  24  24  24  24   1   0  96  24   0   0   7  24  77  24  24   0   1  24  24  24  24  24  24   4  24  76   1  24   0   0   0   0  24  24  24   1  24  24  24  24  24  24  24   1   4   0   0  94
C |   0  24  24  24  24  24  24  24  24  24   4   0   0  24   0   0   9  24   7  24  24   0   1  24  24  24  24  24  24  78  24   7  86  24   0   0   0   0  24  24  24   0  24  24  24  24  24  24  24  90  82   2   0   1
G |  96  24  24  24  24  24  24  24  24  24   1   0   0  24   0  96   1  24   7  24  24  96   1  24  24  24  24  24  24  11  24   5   0  24   2   0  96   0  24  24  24   1  24  24  24  24  24  24  24   4   1   0   0   1
T |   0  24  24  24  24  24  24  24  24  24  90  96   0  24  96   0  79  24   5  24  24   0  93  24  24  24  24  24  24   3  24   8   9  24  94  96   0  96  24  24  24  94  24  24  24  24  24  24  24   1   9  94  96   0

scan!

home
updated Thu Jul 31 18:58:32 2025