7pik_ABC : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
reference complex	7pik_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_A interface=115,116,117,118,120,143,150, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdyknSgapgerRs > 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka > 7pik_C interface=34,116,117,120,140,143,150,205,208,209, mwqinevvlfdndpyrilaiedgqvvwmqisadKgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvtKAtvYkllrrywqrgqtpnalipdYknSgapgerRgtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfRYfydreypkalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgiaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwlqrstqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnkanakqdeltkrreleafiqqtiqkankl
interface signature	TKATYSR/TKATYYSRIRRY/KKAYYSRRRY

Estimated binding specificities ?

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# IC=26.203 IC/col=0.485 n_of_columns=54

specificity:

A |   0  24  24  24  24  24  24  24  24  24   4   0  92  24   0   0   6  24  84  24  24   0   1  24  24  24  24  24  24   3  24  81   0  24   1   0   0   0  24  24  24   0  24  24  24  24  24  24  24   1   4   1   0  90
C |   0  24  24  24  24  24  24  24  24  24   1   0   0  24   0   0   9  24   4  24  24   0   1  24  24  24  24  24  24  80  24   9  87  24   4   0   0   0  24  24  24   0  24  24  24  24  24  24  24  93  82   0   0   1
G |  96  24  24  24  24  24  24  24  24  24   1   0   1  24   0  96   1  24   5  24  24  96   4  24  24  24  24  24  24   9  24   3   0  24   1   0  96   0  24  24  24   1  24  24  24  24  24  24  24   1   1   0   0   1
T |   0  24  24  24  24  24  24  24  24  24  90  96   3  24  96   0  80  24   3  24  24   0  90  24  24  24  24  24  24   4  24   3   9  24  90  96   0  96  24  24  24  95  24  24  24  24  24  24  24   1   9  95  96   4

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updated Wed Sep 11 12:07:43 2024