7pik_ABC : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
reference complex	7pik_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_A interface=115,116,117,118,120,143,150, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdyknSgapgerRs > 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka > 7pik_C interface=34,116,117,120,140,143,150,205,208,209, mwqinevvlfdndpyrilaiedgqvvwmqisadKgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvtKAtvYkllrrywqrgqtpnalipdYknSgapgerRgtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfRYfydreypkalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgiaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwlqrstqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnkanakqdeltkrreleafiqqtiqkankl
interface signature	TKATYSR/TKATYYSRIRRY/KKAYYSRRRY

Estimated binding specificities ?

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# IC=25.988 IC/col=0.481 n_of_columns=54

specificity:

A |   0  96  92   9   1  24  24  24  24  24  24  24  95  24  24  24  96   0  96  92  24   9  11  24   9  24  24  24  24  24  24  90   0  24  24   5  24  80   0  96  24   0  96  90  24  24  24  24  24  24  24  24  24   0
C |   2   0   0   2   1  24  24  24  24  24  24  24   1  24  24  24   0  96   0   1  24   0   7  24   5  24  24  24  24  24  24   1  96  24  24   6  24   1  96   0  24   0   0   1  24  24  24  24  24  24  24  24  24  96
G |   0   0   1  84  93  24  24  24  24  24  24  24   0  24  24  24   0   0   0   0  24  84   9  24  78  24  24  24  24  24  24   4   0  24  24   5  24   3   0   0  24   0   0   4  24  24  24  24  24  24  24  24  24   0
T |  94   0   3   1   1  24  24  24  24  24  24  24   0  24  24  24   0   0   0   3  24   3  69  24   4  24  24  24  24  24  24   1   0  24  24  80  24  12   0   0  24  96   0   1  24  24  24  24  24  24  24  24  24   0

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updated Sun Dec 17 10:38:16 2023