7pik_B : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON (TRANSPOSON TN7 TRANSPOSITION PROTEIN TNSB)
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
sequence family	Integrase core domain;
multimeric complexes	7pik_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka
interface signature	TKATYYSRIRRY

Estimated binding specificities ?

readout + contact

# IC=11.217 IC/col=0.660 n_of_columns=17

specificity:

A |  96   0  96  96  72  81   4  24   4  24  24  24   0  24  24  81   0
C |   0  96   0   0  11   4   4  24   4  24  24  24   4  24  24   4  96
G |   0   0   0   0   4   7   4  24  81  24  24  24  11  24  24   7   0
T |   0   0   0   0   9   4  84  24   7  24  24  24  81  24  24   4   0

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updated Sat Sep 14 04:19:36 2024