7pik_B : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF E. COLI TNSB IN COMPLEX WITH RIGHT END FRAGMENT OF TN7 TRANSPOSON (TRANSPOSON TN7 TRANSPOSITION PROTEIN TNSB)
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Ribonuclease H-like;
sequence family	Integrase core domain;
multimeric complexes	7pik_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7pik_B interface=115,116,117,118,120,140,143,150,158,160,220,224, mwqinevvlfdndpyrilaiedgqvvwmqisadkgvpqaraelllmqyldegrlvrtddpyvhldleepsvdsvsfqkreedyrkilpiinskdrfdpkvrselvehvvqehkvTKATvYkllrrywqrgqtpnalipdYknSgapgerRsatgtakIgRaregegtkvtpeierlfrltiekhllnqkgtkttvayrrfvdlfaqyfpripqedyptlRqfrYfydreypkaalgpgsryeidatiadiylvdhhdrqkiigrptlyividvfsrmitgfyigfenpsyvvamqafvnacsdktaicaqhdieisssdwpcvglpdvlladrgelmshqvealvssfnvrvesapprrgdakgivestfrtlqaefksfapgaslsvfeftqiilrtilfrnnhlvmdkydrdadfptdlpsipvqlwqwgmqhrtgslraveqeqlrvallprrkvsissfgvnlwglyysgseilregwpqhleaaydpvlvdtiylfpqvgsrvfwrcnltersrqfkglsfwevwdiqaqekhnka
interface signature	TKATYYSRIRRY

Estimated binding specificities ?

readout + contact

# IC=10.077 IC/col=0.593 n_of_columns=17

specificity:

A |   0   6  24  24  24  24  24  24   6  24  78   6   6   0   0   0   0
C |   0   6  24  24  24  24  24  24  78  24   6   6   6   0   0   0   0
G |  96   6  24  24  24  24  24  24   6  24   6   6   6   0   0  96   0
T |   0  78  24  24  24  24  24  24   6  24   6  78  78  96  96   0  96

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updated Wed Dec 18 10:57:17 2024