7q94_B : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF AGROBACTERIUM TUMEFACIENS NADQ, DNA COMPLEX. (NADQ transcription factor)
reference	Gasparrini et al. J.Struct.Biol. 214 107917 2022
source	Agrobacterium fabrum (strain C58 / ATCC 33970) / Agrobacterium fabrum (strain C58 / ATCC 33970)
experiment	X-ray (resolution=4.30, R-factor=0.256)
structural superfamily	"Winged helix" DNA-binding domain;Nudix;
multimeric complexes	7q94_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7q94_B interface=222,223,224,225,227,228,249, aeliavvtaittdeprvmtvregaalpsgpfefghrtlqsglrewiheqthhpvgyleqlytfadrrtisigylglvreqfwhgwyeyfpwedhrqgrpdildsiidklrawadsepdsraqrhlradftfgldgggwneeltlqryellyeaglvgeaqseprinfgrpmfadhrrilatgiarlrakikyrpvvfelmadsftllqlqraiealagltlHKQNfRRlieqqqlveetgdmatetggRpaklfrfrqtvlder
interface signature	HKQNRRR

Estimated binding specificities ?

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# IC=10.630 IC/col=1.063 n_of_columns=10

specificity:

A |  67   0  96   9  96   0   0   0   0   9
C |   9  96   0  11   0   0   0  96   0  67
G |   9   0   0   9   0   0   0   0   0  11
T |  11   0   0  67   0  96  96   0  96   9

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updated Wed Dec 18 11:04:29 2024