7qd5_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 48 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd5_D interface=2,3,43,96,98,101,160,260,262,266,603,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWYEYRTYRNR

Estimated binding specificities ?

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# IC=15.454 IC/col=0.552 n_of_columns=28

specificity:

A |   2   3  69  24   3   0   0  24  10   2  24  24  24  24  13  24  24  24  24  24  24  24   0   2   0   0   0   2
C |   1   2   8  24  89   0   8  24  11   2  24  24  24  24   8  24  24  24  24  24  24  24   0   4  96   0   0   2
G |   2   2   8  24   2  96   0  24  64   0  24  24  24  24   6  24  24  24  24  24  24  24   0  87   0   0  96  92
T |  91  89  11  24   2   0  88  24  11  92  24  24  24  24  69  24  24  24  24  24  24  24  96   3   0  96   0   0

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updated Mon Jun 29 02:26:10 2026