7qd5_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 48 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd5_D interface=2,3,43,96,98,101,160,260,262,266,603,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWYEYRTYRNR

Estimated binding specificities ?

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# IC=15.508 IC/col=0.554 n_of_columns=28

specificity:

A |   0   0  96   0  13  96  24  24  24  24  24  24  24  59  24  24  24  24  94  13  24  91   0   0  24  17  96  95
C |  95  96   0   0  65   0  24  24  24  24  24  24  24   7  24  24  24  24   0  53  24   0  96   0  24  13   0   0
G |   1   0   0  96  13   0  24  24  24  24  24  24  24  15  24  24  24  24   1  17  24   5   0  96  24   7   0   1
T |   0   0   0   0   5   0  24  24  24  24  24  24  24  15  24  24  24  24   1  13  24   0   0   0  24  59   0   0

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updated Tue Dec 17 12:39:52 2024