7qd5_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 48 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd5_D interface=2,3,43,96,98,101,160,260,262,266,603,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWYEYRTYRNR

Estimated binding specificities ?

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# IC=15.461 IC/col=0.552 n_of_columns=28

specificity:

A |   1   0  67  24   0   0   0  24   7   1  24  24  24  24   9  24  24  24  24  24  24  24   1   7   0   0   0   1
C |   4   0   7  24  96   0  11  24  11   4  24  24  24  24  11  24  24  24  24  24  24  24   1   1  94   0   0   4
G |   1   0  11  24   0  96   1  24  69   1  24  24  24  24   9  24  24  24  24  24  24  24   4  87   0   0  96  90
T |  90  96  11  24   0   0  84  24   9  90  24  24  24  24  67  24  24  24  24  24  24  24  90   1   2  96   0   1

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updated Sat Aug 2 19:56:27 2025