7qd5_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 48 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd5_D interface=2,3,43,96,98,101,160,260,262,266,603,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWYEYRTYRNR

Estimated binding specificities ?

readout + contact

# IC=15.433 IC/col=0.551 n_of_columns=28

specificity:

A |   0   0  63  24   0   0   0  24  13   0  24  24  24  24  17  24  24  24  24  24  24  24   0   4   1   0   0   0
C |   0   0   7  24  96   0   9  24   9   1  24  24  24  24  11  24  24  24  24  24  24  24   0   5  92   0   0   4
G |   0   0  11  24   0  96   1  24  67   3  24  24  24  24  24  24  24  24  24  24  24  24   2  82   0   0  96  92
T |  96  96  15  24   0   0  86  24   7  92  24  24  24  24  44  24  24  24  24  24  24  24  94   5   3  96   0   0

scan!

home
updated Fri Jan 9 17:01:49 2026