7qd4_A : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 100 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
redundant complexes	7qd5_D 7qd6_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd4_A interface=2,43,96,98,101,160,260,262,266,385,389,603,614,615,619,825, gVkqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrySyvrRyaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VRRNWYEYRSRTYRNR

Estimated binding specificities ?

readout + contact

# IC=20.829 IC/col=0.694 n_of_columns=30

specificity:

A |   6  24   6   0  96   3   0  96  24  24  24  24  24  24  96  78  66  24  24  24  90   6   3  96   0   0  24   0  87  96
C |  78  24  78  96   0   0  96   0  24  24  24  24  24  24   0   6  12  24  24  24   0  84  87   0  96   0  24   0   3   0
G |   6  24   6   0   0  93   0   0  24  24  24  24  24  24   0   6   9  24  24  24   3   3   3   0   0  96  24   0   3   0
T |   6  24   6   0   0   0   0   0  24  24  24  24  24  24   0   6   9  24  24  24   3   3   3   0   0   0  24  96   3   0

scan!

home
updated Sun Aug 3 18:21:42 2025