7qd4_A : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 100 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
redundant complexes	7qd5_D 7qd6_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd4_A interface=2,43,96,98,101,160,260,262,266,385,389,603,614,615,619,825, gVkqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrySyvrRyaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VRRNWYEYRSRTYRNR

Estimated binding specificities ?

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# IC=20.718 IC/col=0.691 n_of_columns=30

specificity:

A |   2   2  96  24   0   0   2   2   2   0  24  24  24   8   8   0  24  24  24  24  24  24   0   0   0   0   0   5  24   2
C |   0   2   0  24  96   0   0   5   8   0  24  24  24   8   8   0  24  24  24  24  24  24   0   0  93   0   0   8  24   5
G |   4   5   0  24   0  96   0  87  84   0  24  24  24  11   5   0  24  24  24  24  24  24   0  96   1   0  96  75  24  78
T |  90  87   0  24   0   0  94   2   2  96  24  24  24  69  75  96  24  24  24  24  24  24  96   0   2  96   0   8  24  11

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updated Wed Dec 18 11:04:48 2024