7qd4_A : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH 100 BP LONG TRANSPOSON END DNA
experiment	NMR
sequence family	Transposase;
redundant complexes	7qd5_D 7qd6_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd4_A interface=2,43,96,98,101,160,260,262,266,385,389,603,614,615,619,825, gVkqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWehlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrySyvrRyaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtniglTkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VRRNWYEYRSRTYRNR

Estimated binding specificities ?

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# IC=20.729 IC/col=0.691 n_of_columns=30

specificity:

A |   0   3  96  24   0   0   0   3   4   0  24  24  24   9   6   0  24  24  24  24  24  24   0   0   0   0   0   9  24   3
C |   1   4   0  24  96   0   0   3   6   0  24  24  24   6   3   0  24  24  24  24  24  24   0   0  93   0   0   6  24   9
G |   3   3   0  24   0  96   0  87  83   4  24  24  24  12   7   0  24  24  24  24  24  24   0  96   0   0  96  74  24  78
T |  92  86   0  24   0   0  96   3   3  92  24  24  24  69  80  96  24  24  24  24  24  24  96   0   3  96   0   7  24   6

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updated Sat Sep 14 04:27:30 2024