7qd6_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH STRAND-TRANSFER LIKE DNA PRODUCT
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd6_D interface=2,3,43,96,98,101,102,160,260,262,266,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWEhlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtnigltkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWEYEYRYRNR

Estimated binding specificities ?

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# IC=17.262 IC/col=0.595 n_of_columns=29

specificity:

A |   3  93  24   0   0   7  25  24  24  24  24  24   7   7   0  24  24  24  24  24  24   0   0   3   0   0   3  24   3
C |   3   0  24  96   0   1   3  24  24  24  24  24   3   2   0  24  24  24  24  24  24   0   0  84   0   0   7  24   2
G |   7   3  24   0  96   0  65  24  24  24  24  24   3   3   0  24  24  24  24  24  24   0  96   3   0  96  81  24  88
T |  83   0  24   0   0  88   3  24  24  24  24  24  83  84  96  24  24  24  24  24  24  96   0   6  96   0   5  24   3

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updated Mon Jun 29 02:27:39 2026