7qd6_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH STRAND-TRANSFER LIKE DNA PRODUCT
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd6_D interface=2,3,43,96,98,101,102,160,260,262,266,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWEhlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtnigltkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWEYEYRYRNR

Estimated binding specificities ?

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# IC=17.337 IC/col=0.598 n_of_columns=29

specificity:

A |   5  24   7   0  96   3   0  96  24  24  24  24  24  24  96  73  81  24  24  24  24  24   5  93   0   3  24   1  92
C |  81  24  83  96   0   0  96   0  24  24  24  24  24  24   0   7   7  24  24  24  24  24  66   0  96   1  24   3   0
G |   7  24   3   0   0  93   0   0  24  24  24  24  24  24   0   7   5  24  24  24  24  24   3   0   0  92  24   0   4
T |   3  24   3   0   0   0   0   0  24  24  24  24  24  24   0   9   3  24  24  24  24  24  22   3   0   0  24  92   0

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updated Sat Aug 2 19:57:33 2025