7qd6_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH STRAND-TRANSFER LIKE DNA PRODUCT
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd6_D interface=2,3,43,96,98,101,102,160,260,262,266,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWEhlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtnigltkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWEYEYRYRNR

Estimated binding specificities ?

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# IC=17.300 IC/col=0.597 n_of_columns=29

specificity:

A |   5  93  24   0   0   0  26  24  24  24  24  24   9   8   0  24  24  24  24  24  24   0   0   0   0   0   3  24   7
C |   3   0  24  96   0   0   3  24  24  24  24  24   3   3   0  24  24  24  24  24  24   0   0  88   0   0   9  24   4
G |   3   3  24   0  96   0  64  24  24  24  24  24   3   7   0  24  24  24  24  24  24   0  96   0   0  96  81  24  78
T |  85   0  24   0   0  96   3  24  24  24  24  24  81  78  96  24  24  24  24  24  24  96   0   8  96   0   3  24   7

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updated Fri Jan 9 17:03:19 2026