7qd6_D : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF TN4430 TNPA TRANSPOSASE FROM TN3 FAMILY IN COMPLEX WITH STRAND-TRANSFER LIKE DNA PRODUCT
experiment	NMR
sequence family	Transposase;
reference complex	7qd4_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7qd6_D interface=2,3,43,96,98,101,102,160,260,262,266,614,615,619,825, gVKqllseaqrnelmdlsrltewdlvtfhtfskhdlhlilkhRrgynrlgfalqlvlirypgwslteykdipqyvvayvasqlqippeeflvyakRgNtlWEhlgeirteygyqnfsseyketllqflvqqamdnnntlylieitistlrkmkvilpamYviedivweakqqadqkvysilhdglvqeqkdqldalllptingksplawlkdvpaqpspesflkvidrlqfvqkigltidttkintnrlrqlarlgskyEpYafrRfnevkrysmlvsflleitqdlidyaieihdrlmmnlqtkgkkeqdeiqqangkklnekilqfitvcgtlieaketgkdafaaldevmswnemvesveeakqlsrplnydyldllntrysyvrryaptllrslhfratksgepvlqaldtihelnetgkrkvphgaplhfvsnrwqkhvydddgninrhyyelaaltelrnhirsgdifvsgsrhhkafddylipydewnevsnipngltaplkaedyitdrinrlnehlewlsrldrgtpeeakafskllhsmlprikltdllievaswtgfhdqfihastnqspdqeeqnivlatlmamgtnigltkmaeatpgisYRqmaNasqwrmyddamvraqsilvnfqkeqklssywgsdgmrlsggtiyrfhvkvitardalhvldgllheehytgytdqvfalthllgfrfaprirdladtklfsqallkgkinvklikenyedirrlaysvqtgkvssalimgklgsyarqnklatalgemgriektlftldyisnkavrrrvqkglnkgeainalariiffgqrgefReralqdqlqraralniiinaisvwntvymekaveelkargefredlmpyawplgwehinflgeykfeglhdtgqmnlrplrik
interface signature	VKRRNWEYEYRYRNR

Estimated binding specificities ?

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# IC=17.270 IC/col=0.596 n_of_columns=29

specificity:

A |   3  96  24   0   0   0  24  24  24  24  24  24   6   7   0  24  24  24  24  24  24   0   0   0   0   0   5  24   7
C |   3   0  24  96   0   0   3  24  24  24  24  24   3   7   0  24  24  24  24  24  24   0   0  88   0   0   7  24   5
G |   3   0  24   0  96   0  66  24  24  24  24  24   3   9   0  24  24  24  24  24  24   0  96   1   0  96  77  24  77
T |  87   0  24   0   0  96   3  24  24  24  24  24  84  73  96  24  24  24  24  24  24  96   0   7  96   0   7  24   7

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updated Tue Dec 17 12:41:09 2024