7r6r_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MYCOBACTERIOPHAGE CLUSTER A2 IMMUNITY REPRESSOR:DNA COMPLEX (Immunity repressor)
reference	Terwilliger et al. 'Nat 13 4105 2022
source	Mycobacterium phage TipsytheTRex
experiment	X-ray (resolution=3.13, R-factor=0.212)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	7tz1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r6r_A interface=30,31,32,33,35,36,61,64,65,67,70,90,94, sripltlseiedlrrkgfnqteiaelygvTRQAvSWhkktyggrlttrqivqqnwpwdtrKphDKsKafQrlrdhgeymrvgsfrtmseDkkkRllswwkmlrdndlvlefdpsiepyegmagggfryvprdisdddllirvnehtqltaegellwswpddieells
interface signature	TRQASWKDKKQDR

Estimated binding specificities ?

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# IC=15.407 IC/col=1.027 n_of_columns=15

specificity:

A |   6   0   0   0   0   6   0   0   0   0   6  96  24   6   6
C |  78   0   0   0   0   6  96   0   0   0  78   0  24   6  78
G |   6  96  96   0  96  78   0   0  96   0   6   0  24  78   6
T |   6   0   0  96   0   6   0  96   0  96   6   0  24   6   6

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updated Fri Sep 13 07:26:53 2024