7r6r_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MYCOBACTERIOPHAGE CLUSTER A2 IMMUNITY REPRESSOR:DNA COMPLEX (Immunity repressor)
reference	Terwilliger et al. 'Nat 13 4105 2022
source	Mycobacterium phage TipsytheTRex
experiment	X-ray (resolution=3.13, R-factor=0.212)
structural superfamily	Sigma3 and sigma4 domains of RNA polymerase sigma factors;
reference complex	7tz1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r6r_A interface=30,31,32,33,35,36,61,64,65,67,70,90,94, sripltlseiedlrrkgfnqteiaelygvTRQAvSWhkktyggrlttrqivqqnwpwdtrKphDKsKafQrlrdhgeymrvgsfrtmseDkkkRllswwkmlrdndlvlefdpsiepyegmagggfryvprdisdddllirvnehtqltaegellwswpddieells
interface signature	TRQASWKDKKQDR

Estimated binding specificities ?

readout + contact

# IC=17.930 IC/col=1.195 n_of_columns=15

specificity:

A |   0   0  16   0   0  96   0  96   0   0   0  96   0   0   0
C |  16  96  16   0   0   0  96   0   0  80  96   0  96  96   0
G |  80   0  16   0  96   0   0   0  96   0   0   0   0   0  96
T |   0   0  48  96   0   0   0   0   0  16   0   0   0   0   0

scan!

home
updated Tue Dec 17 12:54:58 2024