7r8g_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO 5' OH GUIDE DNA
reference	Murakami et al. 'To ? ? ?
experiment	X-ray (resolution=2.50, R-factor=0.213)
structural superfamily	Ribonuclease H-like;
reference complex	7r8i_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r8g_A interface=41,45,49,52,116,119,120,123,135,209,226,238,271,272,285,293,297,501,525,530,664,711,713,747, mtlettlfpleglegltasyqlyavkglsgldeteyhknvNllvRrlsFsmKapfvalsrdgeqfiavpnyvtefpvdhrvvramvklvptgeplnlrfdaaddeydglrlryldFvlQQplFanhhlwqpgsgQpffhkkplkrlddvdlydgvsvraakhpeggfgivcdarskfithtpigaradrkrlgklinrsclykmgdhwYqfridavsdwkvgepsLfegnvpislaqQlvrtagnaapksiidldpeggaleyftstnerRMapaelcfliedtHgrraaklQrqtIlspserrarvngfirrylselniggaklsagarahafftethmppalsfgngtvlapdtskdrfqamqeyssmrrtmmldkkvgffhqdvfppqtlllpesvkkswgpafasdfvgtvqelypaggyrpeiieyrdkaygggvpgqmkallevaergeiksgdvlvmlhringapraqdklaamvcnefekrfgkrvqvihsdSpgrgykrifkndkptyvqqrgrgVnikgYlkgaalnkvclgnsrwpfvlrdplnadvtigidvknnmavftmvaeggrivrvqrsrsrqreqllesqvtqvitemlskelpeikkqvqrvvihrdgrawpaeiagarktfadmaesgliavdadvsvfevlkSspaplrlfsfeeptqenpkgvinpvlgswlklsendgyicttgaplLlQgtadplhvrkafgpmaiedalkdvfdlscltwpKpdscmrlpltiklcdialfdda
interface signature	NRFKFQQFQYLQRMHQISVYSLQK

Estimated binding specificities ?

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# IC=15.999 IC/col=1.067 n_of_columns=15

specificity:

A |   0  96   0   0   0   9  67   9  96  24   0  96   0   0  96
C |   0   0  96   0   0  67   9  69   0  24   0   0  96   0   0
G |   0   0   0   0  96  11  11   9   0  24  96   0   0  96   0
T |  96   0   0  96   0   9   9   9   0  24   0   0   0   0   0

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updated Fri Sep 13 07:27:38 2024