7r8i_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO 5' OH GUIDE DNA IN THE PRESENCE OF MG2+
reference	Murakami et al. 'To ? ? ?
experiment	X-ray (resolution=2.40, R-factor=0.214)
structural superfamily	Ribonuclease H-like;
redundant complexes	7r8g_A 7r8h_A 7r8j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r8i_A interface=45,49,52,116,120,123,133,135,136,156,158,174,207,209,226,238,271,272,285,288,293,294,297,472,525,530,663,664,668,712,713,717,747,750,753, mtlettlfpleglegltasyqlyavkglsgldeteyhknvnllvRrlsFsmKapfvalsrdgeqfiavpnyvtefpvdhrvvramvklvptgeplnlrfdaaddeydglrlryldFvlqQplFanhhlwqpgSgQPffhkkplkrlddvdlydgvSvRaakhpeggfgivcdaRskfithtpigaradrkrlgklinrsclykmgdHwYqfridavsdwkvgepsLfegnvpislaqQlvrtagnaapksiidldpeggaleyftstnerRMapaelcfliedtHgrRaaklQRqtIlspserrarvngfirrylselniggaklsagarahafftethmppalsfgngtvlapdtskdrfqamqeyssmrrtmmldkkvgffhqdvfppqtlllpesvkkswgpafasdfvgtvqelypaggyrpeiieyrdkaygggvpgqmkallevaergeiksgdvlvmlhringaPraqdklaamvcnefekrfgkrvqvihsdspgrgykrifkndkptyvqqrgrgVnikgYlkgaalnkvclgnsrwpfvlrdplnadvtigidvknnmavftmvaeggrivrvqrsrsrqreqllesqvtqvitemlskelpeikkqvqrvvihrdgrawpaeiagarktfadmaesgliavdadvsvfevlKSspaPlrlfsfeeptqenpkgvinpvlgswlklsendgyicttgapllLQgtaDplhvrkafgpmaiedalkdvfdlscltwpKpdScmRlpltiklcdialfddaae
interface signature	RFKFQFSQPSRRHYLQRMHRQRIPVYKSPLQDKSR

Estimated binding specificities ?

contact

# IC=19.958 IC/col=1.174 n_of_columns=17

specificity:

A |  11   0  96   9   9   0   0  96   0  96   0   0   0   0  96   0   0
C |   9   0   0  67  11   0  96   0  96   0   0   0   0   0   0  96   0
G |   9   0   0  11   9  96   0   0   0   0  96  96   0  96   0   0  96
T |  67  96   0   9  67   0   0   0   0   0   0   0  96   0   0   0   0

scan!

home
updated Tue Dec 19 20:34:42 2023