7r8i_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO 5' OH GUIDE DNA IN THE PRESENCE OF MG2+
reference	Murakami et al. 'To ? ? ?
experiment	X-ray (resolution=2.40, R-factor=0.214)
structural superfamily	Ribonuclease H-like;
redundant complexes	7r8g_A 7r8h_A 7r8j_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r8i_A interface=45,49,52,116,120,123,133,135,136,156,158,174,207,209,226,238,271,272,285,288,293,294,297,472,525,530,663,664,668,712,713,717,747,750,753, mtlettlfpleglegltasyqlyavkglsgldeteyhknvnllvRrlsFsmKapfvalsrdgeqfiavpnyvtefpvdhrvvramvklvptgeplnlrfdaaddeydglrlryldFvlqQplFanhhlwqpgSgQPffhkkplkrlddvdlydgvSvRaakhpeggfgivcdaRskfithtpigaradrkrlgklinrsclykmgdHwYqfridavsdwkvgepsLfegnvpislaqQlvrtagnaapksiidldpeggaleyftstnerRMapaelcfliedtHgrRaaklQRqtIlspserrarvngfirrylselniggaklsagarahafftethmppalsfgngtvlapdtskdrfqamqeyssmrrtmmldkkvgffhqdvfppqtlllpesvkkswgpafasdfvgtvqelypaggyrpeiieyrdkaygggvpgqmkallevaergeiksgdvlvmlhringaPraqdklaamvcnefekrfgkrvqvihsdspgrgykrifkndkptyvqqrgrgVnikgYlkgaalnkvclgnsrwpfvlrdplnadvtigidvknnmavftmvaeggrivrvqrsrsrqreqllesqvtqvitemlskelpeikkqvqrvvihrdgrawpaeiagarktfadmaesgliavdadvsvfevlKSspaPlrlfsfeeptqenpkgvinpvlgswlklsendgyicttgapllLQgtaDplhvrkafgpmaiedalkdvfdlscltwpKpdScmRlpltiklcdialfddaae
interface signature	RFKFQFSQPSRRHYLQRMHRQRIPVYKSPLQDKSR

Estimated binding specificities ?

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# IC=19.997 IC/col=1.176 n_of_columns=17

specificity:

A |   9   0  96   9   9   0   0  96   0  96   0   0   0   0  96   0   0
C |  11   0   0  67   9   0  96   0  96   0   0   0   0   0   0  96   0
G |   9   0   0   9   9  96   0   0   0   0  96  96   0  96   0   0  96
T |  67  96   0  11  69   0   0   0   0   0   0   0  96   0   0   0   0

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updated Sat Sep 14 04:31:43 2024