7r8h_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO 5' P GUIDE DNA
reference	Murakami et al. 'To ? ? ?
experiment	X-ray (resolution=2.54, R-factor=0.202)
structural superfamily	Ribonuclease H-like;
reference complex	7r8i_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r8h_A interface=41,44,45,48,49,52,57,112,116,120,123,133,207,209,212,226,238,271,272,283,285,293,297,473,501,525,530,628,711,713,747, mtlettlfplegtgacgasyqlyavkglsgldeteyhknvNllVRrlSFsmKapfvAlsrdgeqfiavpnyvtefpvdhrvvramvklvptgeplnlrfdaaddeydglrlRyldFvlqQplFanhhlwqpgSgqpffhkkplkrlddvdlydgvsvraakhpeggfgivcdarskfithtpigaradrkrlgklinrsclykmgdHwYqfRidavsdwkvgepsLfegnvpislaqQlvrtagnaapksiidldpeggaleyftstnerRMapaelcflieDtHgrraaklQrqtIlspserrarvngfirrylselniggaklsagarahafftethmppalsfgngtvlapdtskdrfqamqeyssmrrtmmldkkvgffhqdvfppqtlllpesvkkswgpafasdfvgtvqelypaggyrpeiieyrdkaygggvpgqmkallevaergeiksgdvlvmlhringapRaqdklaamvcnefekrfgkrvqvihsdSpgrgykrifkndkptyvqqrgrgVnikgYlkgaalnkvclgnsrwpfvlrdplnadvtigidvknnmavftmvaeggrivrvqrsrsrqreqllesqvtqvitemlskelpeikkqvqrvvihrdgRawpaeiagarktfadmaesgliavdadvsvfevlksspaplrlfsfeeptqenpkgvinpvlgswlklsendgyicttgaplLlQgtadplhvrkafgpmaiedalkdvfdlscltwpKpdscmrlpltiklcdialfdda
interface signature	NVRSFKARFQFSHYRLQRMDHQIRSVYRLQK

Estimated binding specificities ?

contact

# IC=16.997 IC/col=0.944 n_of_columns=18

specificity:

A |   0  14  60   9   0   0   0  96  24  38  24   0   0   0  96   0   0  96
C |   0  14  12  67   0   0  96   0  24  20  24   0   0   0   0  96   0   0
G |   0  14  12  11   0  96   0   0  24  19  24  96   0  96   0   0  96   0
T |  96  54  12   9  96   0   0   0  24  19  24   0  96   0   0   0   0   0

scan!

home
updated Fri Sep 13 07:27:49 2024