7r8j_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PSEUDOOCEANICOLA LIPOLYTICUS ARGONAUTE BOUND TO 5' P GUIDE DNA IN THE PRESENCE OF MG2+
reference	Murakami et al. 'To ? ? ?
experiment	X-ray (resolution=2.70, R-factor=0.208)
structural superfamily	Ribonuclease H-like;
reference complex	7r8i_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7r8j_A interface=45,49,52,116,119,120,123,133,207,209,226,238,271,272,283,285,293,294,297,473,501,525,530,713,747, mtlettlfplegtgacgasyqlyavkglsgldeteyhknvnllvRrlsFsmKapfvalsrdgeqfiavpnyvtefpvdhrvvramvklvptgeplnlrfdaaddeydglrlryldFvlQQplFanhhlwqpgSgqpffhkkplkrlddvdlydgvsvraakhpeggfgivcdarskfithtpigaradrkrlgklinrsclykmgdHwYqfridavsdwkvgepsLfegnvpislaqQlvrtagnaapksiidldpeggaleyftstnerRMapaelcflieDtHgrraaklQRqtIlspserrarvngfirrylselniggaklsagarahafftethmppalsfgngtvlapdtskdrfqamqeyssmrrtmmldkkvgffhqdvfppqtlllpesvkkswgpafasdfvgtvqelypaggyrpeiieyrdkaygggvpgqmkallevaergeiksgdvlvmlhringapRaqdklaamvcnefekrfgkrvqvihsdSpgrgykrifkndkptyvqqrgrgVnikgYlkgaalnkvclgnsrwpfvlrdplnadvtigidvknnmavftmvaeggrivrvqrsrsrqreqllesqvtqvitemlskelpeikkqvqrvvihrdgrawpaeiagarktfadmaesgliavdadvsvfevlksspaplrlfsfeeptqenpkgvinpvlgswlklsendgyicttgaplllQgtadplhvrkafgpmaiedalkdvfdlscltwpKpdscmrlpltiklcdia
interface signature	RFKFQQFSHYLQRMDHQRIRSVYQK

Estimated binding specificities ?

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# IC=15.135 IC/col=1.164 n_of_columns=13

specificity:

A |   0   0  54  13   0   0   0  96   0  96   0   0  96
C |   0   0  13  57   0   0  96   0   0   0  96   0   0
G |   0   0  16  13   0  96   0   0  96   0   0  96   0
T |  96  96  13  13  96   0   0   0   0   0   0   0   0

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updated Fri Jan 9 17:20:49 2026