interface graph thumbnail
legend  pdf

structure nameKOD-RI INCORPORATING DNA, N+2
(DNA polymerase)
referenceChaput et al. 'Nucleic 50 9663 2022
sourceThermococcus kodakarensis
experimentX-ray (resolution=2.71, R-factor=0.164)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
reference complex7om3_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYKR

Estimated binding specificities ?

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# IC=2.250 IC/col=0.562 n_of_columns=4 specificity:   
A |   7   7   7   9
C |   9  73   7  73
G |   7   9  73   7
T |  73   7   9   7
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updated Tue Dec 17 13:02:55 2024