7sdp_C : 3D-footprint complex

structure name	REPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES. (REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN)
reference	Ward et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=3.01, R-factor=0.185)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	8ac8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7sdp_C interface=61,62,63,65,66,69,102,175,176,178,180,181,184,185,211, krknsprivqsndlteaayslsrdqkrmlylfvdqirksdehdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyrkgyesfpwfikpahspsRglysvhinpylipffiglqnrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdits
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=12.438 IC/col=0.732 n_of_columns=17

specificity:

A |   5   5  24   6   0   0  10  24  24  24  24   0   0   0   0  96   0
C |   6  10  24  15   0   0  26  24  24  24  24   6   0   0  96   0  96
G |   0  71  24  15  96  96  50  24  24  24  24   0  96   0   0   0   0
T |  85  10  24  60   0   0  10  24  24  24  24  90   0  96   0   0   0

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updated Mon Jun 29 03:00:13 2026