interface graph thumbnail
legend  pdf

structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES.
(REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN)
referenceWard et al.
sourceESCHERICHIA COLI
experimentX-ray (resolution=3.01, R-factor=0.185)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex7rva_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

readout + contactlogo
# IC=12.095 IC/col=0.711 n_of_columns=17 specificity:   
A |   4   9  24   9   0   0   9  24  24  24  24   4   0   0   0  96   0
C |  11   6  24  13   0   0  18  24  24  24  24   4   0   0  96   0  96
G |   4  68  24  10  96  96  65  24  24  24  24   6  96   0   0   0   0
T |  77  13  24  64   0   0   4  24  24  24  24  82   0  96   0   0   0
scan!

home
updated Tue Dec 19 00:00:01 2023