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structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES.
(REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN)
referenceWard et al.
sourceESCHERICHIA COLI
experimentX-ray (resolution=3.01, R-factor=0.185)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=13.513 IC/col=0.751 n_of_columns=18 specificity:   
A |   8   0   0   0  96   0  92  24  24  24  24  12   0   0  64  24   8  84
C |  12   0   0   0   0  96   4  24  24  24  24  64  96  96  24  24  80   4
G |   8  96   0  96   0   0   0  24  24  24  24  16   0   0   4  24   4   8
T |  68   0  96   0   0   0   0  24  24  24  24   4   0   0   4  24   4   0
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updated Tue Dec 17 13:09:40 2024