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structure nameTHE NUCLEOPROTEIN COMPLEX OF REP PROTEIN WITH DUE SSDNA
(Replication initiation protein)
referenceKonieczny et al. 'Nucleic 51 10551 2023
sourceEscherichia coli
experimentX-ray (resolution=1.60, R-factor=0.213)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
redundant complexes1rep_C 2z9o_A 7rva_C 7sdp_C 7sgc_C 7soz_C 7spm_C 7u6k_C 7u7o_C 7ufx_C 7uog_C 7ur0_C 7uv6_C 7uv7_C 7uxy_C 8aan_A 8d86_C 8d8m_C 8tip_C 8tiq_C 8tir_C 8tis_C 8tit_C 8tiu_C 8tiv_C 8tiw_C 8tix_C 8tiy_C 8tiz_C 8tj0_C 8tj1_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRVNRLNRFQQYKIVS

Estimated binding specificities ?

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# IC=7.094 IC/col=0.887 n_of_columns=8 specificity:   
A |  96   0   0  12   0   0  31  16
C |   0   0   0  12   0   0  21  16
G |   0   0   0  12   0   0  21  19
T |   0  96  96  60  96  96  23  45
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updated Wed Dec 18 15:33:39 2024