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legend  pdf

structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL FIVE PRIME PHOSPHATES.
(REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN)
referenceWard et al.
sourceESCHERICHIA COLI
experimentX-ray (resolution=2.70, R-factor=0.189)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=11.147 IC/col=0.656 n_of_columns=17 specificity:   
A |   1  11  24  11  24   0   5  24  24  24  24   5   0   0   0  96   0
C |   5  11  24   5  24   0  67  24  24  24  24   5   0   0  96   0  96
G |   0  67  24  16  24  96  13  24  24  24  24   5  96   0   0   0   0
T |  90   7  24  64  24   0  11  24  24  24  24  81   0  96   0   0   0
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updated Tue Dec 17 13:11:30 2024