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legend  pdf

structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL FIVE PRIME PHOSPHATES.
(REPB FAMILY PLASMID REPLICATION INITIATOR PROTEIN)
referenceWard et al.
sourceESCHERICHIA COLI
experimentX-ray (resolution=2.70, R-factor=0.189)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex7rva_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=10.272 IC/col=0.604 n_of_columns=17 specificity:   
A |   0   7  24  24  24   0   7  24  24  24  24   7   0   0   0  96   0
C |   7   7  24  24  24   0  68  24  24  24  24   9   0   0  96   0  96
G |   8  73  24  24  24  96   7  24  24  24  24  14  96   0   0   0   0
T |  81   9  24  24  24   0  14  24  24  24  24  66   0  96   0   0   0
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updated Tue Dec 19 00:01:35 2023