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structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES CHEMICALLY CROSSLINKED (5 MG/ML EDC, 12 HOURS).
(RepB family plasmid replication initiator protein)
referenceWard et al.
sourceEscherichia coli
experimentX-ray (resolution=3.14, R-factor=0.197)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex7rva_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=9.837 IC/col=0.579 n_of_columns=17 specificity:   
A |   0   0   0  84   0  62  24  24  24  24  24   0  24  67  24   0  75
C |   0   0   0   5  96  11  24  24  24  24  24  96  24   5  24  84   5
G |  96   0  96   2   0  12  24  24  24  24  24   0  24  13  24   5  11
T |   0  96   0   5   0  11  24  24  24  24  24   0  24  11  24   7   5
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updated Tue Dec 19 00:02:30 2023