interface graph thumbnail
legend  pdf

structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES CHEMICALLY CROSSLINKED (5 MG/ML EDC, 12 HOURS).
(RepB family plasmid replication initiator protein)
referenceWard et al.
sourceEscherichia coli
experimentX-ray (resolution=3.14, R-factor=0.197)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

readout + contactlogo
# IC=9.947 IC/col=0.585 n_of_columns=17 specificity:   
A |   0   5  24  10  24   0  24  24  24  24  24   5   0   0   0  91   0
C |   6   5  24  12  24   0  24  24  24  24  24  10   0   5  96   5  96
G |   5  81  24  10  24  96  24  24  24  24  24  12  96   6   0   0   0
T |  85   5  24  64  24   0  24  24  24  24  24  69   0  85   0   0   0
scan!

home
updated Fri Sep 13 07:41:53 2024