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structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES CHEMICALLY CROSSLINKED (30 MG/ML EDC, 12 HOURS, 2 DOSES).
(RepB family plasmid replication initiator protein)
referenceWard et al.
sourceEscherichia coli
experimentX-ray (resolution=3.28, R-factor=0.204)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex8ac8_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=11.067 IC/col=0.615 n_of_columns=18 specificity:   
A |   0   6  24  24  24   0  12  24  24  24  24   6   0   0   0  90   0  72
C |   6   6  24  24  24   0  60  24  24  24  24  12   0   0  96   0  96   6
G |   0  84  24  24  24  96  12  24  24  24  24  12  96   0   0   0   0  12
T |  90   0  24  24  24   0  12  24  24  24  24  66   0  96   0   6   0   6
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updated Tue Dec 17 13:12:42 2024