interface graph thumbnail
legend  pdf

structure nameREPLICATION INITIATOR PROTEIN REPE54 AND COGNATE DNA SEQUENCE WITH TERMINAL THREE PRIME PHOSPHATES CHEMICALLY CROSSLINKED (30 MG/ML EDC, 12 HOURS, 2 DOSES).
(RepB family plasmid replication initiator protein)
referenceWard et al.
sourceEscherichia coli
experimentX-ray (resolution=3.28, R-factor=0.204)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyInitiator Replication protein;
multimeric complexes2z9o_AB
reference complex7rva_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSAESKRRSYRPDRRR

Estimated binding specificities ?

readout + contactlogo
# IC=11.295 IC/col=0.627 n_of_columns=18 specificity:   
A |   6   0   6   0  96   0  72  24  24  24  24  12   0  24  24  24   0  90
C |  18   0   0   0   0  96  12  24  24  24  24  12  96  24  24  24  84   0
G |   6  96   0  96   0   0   0  24  24  24  24  66   0  24  24  24   6   6
T |  66   0  90   0   0   0  12  24  24  24  24   6   0  24  24  24   6   0
scan!

home
updated Tue Dec 19 00:02:41 2023