interface graph thumbnail
legend  pdf

structure nameMVV CLEAVED SYNAPTIC COMPLEX (CSC) INTASOME AT 3.4 A RESOLUTION
sourceVISNA/MAEDI VIRUS EV1 KV1772
experimentNMR
structural superfamilyRibonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex7u32_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureR/QAERQ/TKPMA

Estimated binding specificities ?

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# IC=5.339 IC/col=0.667 n_of_columns=8 specificity:   
A |   9  67  24  24   9   0   0   0
C |   9   9  24  24  11  96   0  96
G |  69  11  24  24   9   0  96   0
T |   9   9  24  24  67   0   0   0
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updated Wed Sep 11 14:26:04 2024