7u6k_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL G-C RICH SEQUENCE. (Replication initiation protein)
reference	Ward et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=2.38, R-factor=0.187)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u6k_C interface=54,55,56,58,59,62,92,162,163,165,167,168,171,172,198, sprivqsndlteaayslsrdqkrmlylfvdqirksdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffigrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrdi
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=15.084 IC/col=0.718 n_of_columns=21

specificity:

A |  84   0  24   4   0   0   0  96   0  86  24  24  24  24   4   0   0  24  24   9  87
C |   4  96  24   9   0   0   0   0  96   6  24  24  24  24  64  96  96  24  24  73   0
G |   4   0  24  10  96   0  96   0   0   4  24  24  24  24  19   0   0  24  24   4   9
T |   4   0  24  73   0  96   0   0   0   0  24  24  24  24   9   0   0  24  24  10   0

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updated Tue Dec 19 00:22:37 2023