7u7o_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL T-A RICH SEQUENCE. (Replication initiation protein)
reference	Ward et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=2.97, R-factor=0.247)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	8ac8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u7o_C interface=56,57,58,60,61,64,95,165,166,168,170,171,174,175,201, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyryesfpwfikpahspsRglysvhinpylipffinrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrditsm
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=15.696 IC/col=0.747 n_of_columns=21

specificity:

A |   0   5  67  24   0   0   3  24  24  24  24   0   0   0   0  96   0  71  24   7   0
C |  21   7   7  24   0   0  85  24  24  24  24   0   0   0  96   0  96  11  24   8  82
G |   1  81   8  24  96  96   3  24  24  24  24   0  96   0   0   0   0   7  24  78   0
T |  74   3  14  24   0   0   5  24  24  24  24  96   0  96   0   0   0   7  24   3  14

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updated Fri Sep 13 08:03:53 2024