7u7o_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL T-A RICH SEQUENCE. (Replication initiation protein)
reference	Ward et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=2.97, R-factor=0.247)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	8ac8_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u7o_C interface=56,57,58,60,61,64,95,165,166,168,170,171,174,175,201, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyryesfpwfikpahspsRglysvhinpylipffinrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrditsm
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=15.619 IC/col=0.744 n_of_columns=21

specificity:

A |  11   3  24  10   0   0   0  96   0  96  24  24  24  24   3   0   4  24  10   3  80
C |   3  76  24   3   0   0   0   0  96   0  24  24  24  24   3  96  92  24   3  80   0
G |  76  10  24  11  96   0  96   0   0   0  24  24  24  24  87   0   0  24   7   6  16
T |   6   7  24  72   0  96   0   0   0   0  24  24  24  24   3   0   0  24  76   7   0

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updated Tue Dec 17 13:36:50 2024