7u7o_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SYMMETRICAL EXPANDED DUPLEX (31MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN ADDITIONAL T-A RICH SEQUENCE. (Replication initiation protein)
reference	Ward et al.
source	Escherichia coli K-12
experiment	X-ray (resolution=2.97, R-factor=0.247)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7u7o_C interface=56,57,58,60,61,64,95,165,166,168,170,171,174,175,201, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyryesfpwfikpahspsRglysvhinpylipffinrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgRqtthivfsfrditsm
interface signature	SAESKRRSYRPDRRR

Estimated binding specificities ?

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# IC=15.900 IC/col=0.757 n_of_columns=21

specificity:

A |   8   4  24   4   0   0   0  96   0  96  24  24  24  24   8   0   4  24  20   4  68
C |   0  84  24   4   0   0   0   0  96   0  24  24  24  24   4  96  92  24   0  80   0
G |  88   4  24  12  96   0  96   0   0   0  24  24  24  24  80   0   0  24   8   4  28
T |   0   4  24  76   0  96   0   0   0   0  24  24  24  24   4   0   0  24  68   8   0

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updated Tue Dec 19 00:24:54 2023