7uv7_C : 3D-footprint complex

structure name	ISORETICULAR, INTERPENETRATING CO-CRYSTAL OF REPLICATION INITIATOR PROTEIN REPE54 AND SCAFFOLD DUPLEX (21MER) CONTAINING THE COGNATE REPE54 SEQUENCE AND AN INSERT DUPLEX (10MER) WITH GUEST TAMRA- LABELLED THYMINE AND T-A RICH SEQUENCE. (Replication initiation protein)
reference	Orun et al. 'To ? ? ?
source	Escherichia coli K-12
experiment	X-ray (resolution=3.02, R-factor=0.235)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Initiator Replication protein;
multimeric complexes	2z9o_AB
reference complex	7rva_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7uv7_C interface=56,57,58,60,61,64,94,164,165,167,169,170,173,174, nsprivqsndlteaayslsrdqkrmlylfvdqirkshdgiceihvakyaeifgltSAEaSKdiRqalksfagkevvfyyesfpwfikpahspsRglysvhinpylipffigrftqfrlsetkeitnpyamrlyeslcqyrkpdgsgivslkidwiieryqlpqSYqRmPDfrRRflqvcvneinsrtpmrlsyiekkkgrqtthivfsfrdi
interface signature	SAESKRRSYRPDRR

Estimated binding specificities ?

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# IC=11.107 IC/col=0.653 n_of_columns=17

specificity:

A |   0  12  24  18  24   0   6  24  24  24  24   0   0   0   0  96   0
C |  12  12  24  12  24   0  54  24  24  24  24   0   0   0  96   0  96
G |   0  60  24  54  24  96  24  24  24  24  24   0  96   0   0   0   0
T |  84  12  24  12  24   0  12  24  24  24  24  96   0  96   0   0   0

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updated Tue Dec 19 00:30:29 2023