7uy7_ABE : 3D-footprint complex

structure name	TETRAHYMENA CST WITH POLYMERASE ALPHA-PRIMASE
experiment	NMR
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
reference complex	7uy7_A 7uy7_B 7uy7_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7uy7_A interface=180,338,340,342,372,420,422,424,462, nlkiledvkklylqsfdyikngissflykfisvnptlllinektqakrrifqgeylygkkkiqfniiaknleiereliqffkkpyqcyimhnvqvfqlyylidesshvleddsmdfistltrlsdsfnsnefvfetnysiqisqmpkplntthfkllqpkvvnsfegvilqvqegknilQieelidqvylnsrrdrfyilkvangknymdfievylvydnedqeakqqlqfylkpfqrilifqslkhftknlklfmisffyssgvqpnnsnvknflvshkgveffsrfdiqknellckdliksynklplsnisklledegvmirsnmkfqvrvkkvkYfKiRlnclnckqewtvglkncinckgqqsyisyNiqvlvqdqhfleqqayiylyddlaaqffnitesekkelhlhltknetFiQlYysfnkdyplsiikfkdkifnkditncivaypfadidnKifnsqqqiiqdenlriesekfiqnftenkqqifvngtyistnysqgqkiclkpipclkvmyvfpqediklsalkiieeinqlkiqidqln > 7uy7_B interface= dnfelvflkelpslpdfskvcftglilsfsnfpsseqnqqkdvphkiaiiqdstgeaelfldmykfcqeeisvfkaitgigvlkkknigagqvckiiverfriihsadeemlqylliqkyklsktlneqqqikqntlkykeliagelmrithklliqklqqikiqeiakdqqlydtlsiQyqvdqkeqyyakiaqsledfvsisalkmvsyiypnisyqvsigffqnildiatktvkdrgalgcnykylkdkltkalnlqqisyplisesyisylvhlfqdfniieieneh > 7uy7_E interface=340,342,345,346, vkkindyknedgsvdaylydyfydaqvkpdkiyafakvqnkqtnafdtcviqidtiirnlffypssdtvteqqikneiaellkkeqtsrknveflgafvdknyafelpiprgksrwyqvvmsyeyevispdtkgqyfsystysaletflitkkitgpswvrfqnvkdttscitnrklefrvdytnqsniqvlqkqlptpplsvvcislktsqqivlsqkkkeykkeifnlnmkyheginidnsnkdelnqfksisfithidptkkqdsitkkgtlpettkfclnelnlleqflvhfneidpdivvahdlystvfeiiltrirekgirkwnllsklinigSsDipKYgsstfktkmamkgrllvdtllssqefvncveytlealaqklfkieipridakayqqkfatykllnslvddtyqdidyalrimyhlqivpltkqltsicgniwmgslqnqraernemlllhkfnqlnyvypdnfknlpesykkkhknaqirkqyeedkglyneyivlldfnslypsiiqefnvcfttcvrdpiplemqmapflgnkiaplpsilqylveqrkvvknqikgqkdpqvietldikqkafklvansmygclgfsssrfyamplasfitakgrhilfdskkivedmgysviygdtdslmikpgtnefleavktglsikikvnskykklqldidgvfknmlllkkkkyatlkvanweevekeikglsrdagnkileiileskssenmlddikkyliqlnddlqyykrfqlfepikrmlevieginlqeiasil
interface signature	QYKRNFQYK/Q/SDKY

Estimated binding specificities ?

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# IC=6.312 IC/col=0.631 n_of_columns=10

specificity:

A |  14  24  24  24  21   4   0   0   0   0
C |  14  24  24  24  21   7   0   0   0   0
G |  52  24  24  24  33  81  96   0   0  96
T |  16  24  24  24  21   4   0  96  96   0

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updated Wed Sep 11 15:05:44 2024