7vjm_AB : 3D-footprint complex

structure name	ACA1 IN COMPLEX WITH 19BP PALINDROMIC DNA SUBSTRATE
reference	Zhang et al. J.Biol.Chem. 297 101357 2021
source	Pseudomonas phage JBD30
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	7c0g_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vjm_A interface=28,37,39,40,42,43,54, vktpdasnhdpdprylrgllkkagisqRraaellglSdRVmRYylsedikegyRpapytvqfaleclandpps > 7vjm_B interface=36,38,39,41,42,53, ktpdasnhdpdprylrgllkkagisqrraaellglSdRVmRYylsedikegyRpapytvqfaleclandpps
interface signature	RSRVRYR/SRVRYR

Estimated binding specificities ?

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# IC=14.145 IC/col=0.884 n_of_columns=16

specificity:

A |  73   0   0   0  96   0  24  24  24   0   0   7   0   7   7  73
C |   7   0   0  88   0  96  24  24  24   0   0   0  96  88   9   9
G |   7  96  96   0   0   0  24  24  24  96   0  88   0   1   7   7
T |   9   0   0   8   0   0  24  24  24   0  96   1   0   0  73   7

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updated Sun Dec 15 16:10:13 2024