7c0g_B : 3D-footprint complex

structure name	ACA1 IN COMPLEX WITH 14BP PALINDROMIC DNA TARGET (ACA1)
reference	Zhang et al. 'To ? ? ?
source	PSEUDOMONAS PHAGE JBD30
experiment	X-ray (resolution=2.40, R-factor=0.220)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	7vjm_AB
redundant complexes	7vjm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7c0g_B interface=36,38,39,41,42,53, ktpdasnhdpdprylrgllkkagisqrraaellglSdRVmRYylsedikegyRpapytvqfaleclandpp
interface signature	SRVRYR

Estimated binding specificities ?

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# IC=5.300 IC/col=0.883 n_of_columns=6

specificity:

A |  11   0   9   9   0   0
C |   9   0  11  11  96  96
G |   9  96   9  67   0   0
T |  67   0  67   9   0   0

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Dendrogram of similar interfaces ?

matrix format

  
  ------NTQASAHTSTQT----TTPG--   L   +---------------------------1ic8_B    
                                     ! 
  --------QASTCTSART----ET----   L   !                           +5j2y_A    
                                   --4                      +----1 
  ----AT--QAAT--SA------------       ! +--------------------2    +4z5h_A    
                                     ! !                    ! 
  RT--------RG----NT----ETRTYA   L   +-3                    +----7f9h_B    
                                       ! 
  --QT----VTNT------STRG------   L     +-------------------------3o9x_A

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updated Wed Dec 18 08:17:29 2024