7vpz_CDFMN : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH ONE ZUR DIMER
experiment	NMR
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7vo0_N 7vpz_N 7x74_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vpz_C interface=146,154,178,184,186,341,347,366,373,393,400,404,410,434,437,438,443, astaplrisfakikeplevpnllalqtesfdwllgndawkarvesalesgqdvptksgleeifeeispiedfsgsmsltfrdhrfeppknsideckdrdftyaaplfvtaeftnnetgeiksqtvfmgdfplmtnkgtfvingteRvvvsqlvRspgvyfdssidktsdkdifsakiIpsrgaWlEmeidkrdmvgvridrkrkqsvtvllkalgwtteqileefgeyesmratlekdhtqgqddalldiyrklrpgepptreaaqtllenlyfnpkrydlakvgrykvnkklgadepldagvlttddviatikylvklhagetetvgesgreivvetddIdhfgnRrirnvgeliqnqvrtglaRmervvrErmttqdveaitpqtlinirPvvasikEffgTsqlsqFmdqnnplsglthkrrlnalgpggLsrERagfeVrdvhpshygrmcpietpegpnigligslasygrinpfgfietpyrkvvegqvtddvdyltadeedrfviaqanaalgddmrfaearvlvrrrggevdyvpgddvdymdvsprqmvsvatamipflehddanralmganmmrqavpliksesplvgtgmeyrsaadagdvvkaekagvvqevsadyitttnddgtyityrlakfsrsnqgtsvnqkvivaegdriiegqvladgpatengemalgknllvafmpweghnyedaiilsqrlvqddvlssihieehevdardtklgpeeitrdipnvseevladldergiirigaevvagdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgeigkvigvrvfdreegdelppgvnqlvrvyvaqkrkitdgdklagrhgnkgviskinpiedmpfledgtpvdiilnplavpsrmnpgqvleihlgwlasrgwdvsglaeewaqrlqvigadkvepgtnvatpvfdgaredelagllqhtipnrdgermvlpsgkarlfdgrsgepfpepisvgymyilklhhlvddklharstgpysmitqqplggkaqfggqrfgemevwaleaygaayalqelltiksddvtgrvkvyeaivkgenipepgipesfkvlikemqslclnvevlssdgmsie > 7vpz_D interface=281,495,496,534,856, fdelriglataddirqwshgevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekviyfaaymitfvdeerrtrdlpsleahvsverqqieqrrdsdlearakkletdlaeleaegakadvrrkvregaeremkqlrdraqreidrldevwnrfknlkvqdlegdellyrelrdrfgtyfdgsmgaaalqkrlesfdldeeaerlreiirtgkgQkktralkrlkvvsaflqtsnspkgmvldcvpvippdlrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapeiivnnekrmlqeavdalfdngrrgrpvtgpgnrplkslsdmlkgkqgrfrqnllgkrvdysarsvivvgpqlklhqcglpkamalelfkpfvmkrlvdlnhaqniksakrmvergrtvvydvleeviaehpvllnrAPtlhrlgiqafepqlvegkaiqihplvctafnadfdgdQmavhlplsaeaqaearilmlssnnilkpadgrpvtmptqdmvlglfflttdsegrspkgegrafgssaeaimafdagdltlqakidirfpvgtipprgfeppareegepewqqgdtftlkttlgralfnellpedypfvdyevgkkqlseivndlaerypkvivaatldnlkaagffwatrsgvtvaisdivvpdakkeivkgyegqdekvqkqyerglitkeertqeliaiwtkatnevaeamndnfpktnpvsmmvnsgargnmmqmrqiagmrglvsnaknetiprpikasfreglsvleyfisthgarkgladtalrTadsgyltrrlvdvsqdviireedcgterglklpiatrdadgtlrkaedvetsvyarmlaedvvidgkviapanvdlgdvlidalvahgveevktrsiltcesqvgtcamcygrslatgklvdigeavgiiaaqsigepgtqltmrtfhtggvagdditqglprvvelfeartpkgvapiseasgrvrieetektkkivvtpddgsdetafpiskrarllvgegdhvevgqkltvgatnphdvlrilgqravqvhlvgevqkvynsqgvsihdkhieiiirqmlrrvtiiesgdaellpgelvertkfetenrrvvqegghpasgrpqlmgitkaslateswlsaasfqettrvltdaainaksdsliglkenviigklipagtglsryrnirvepteeakaam > 7vpz_F interface=6,7,10,13,15,18,73,75,76,78,84,85,87,91,113,115,118,119,120,122,123,124,126,127,130,131,144,145,201,203,206,273,274,275,276,278, atadpVKdyLkqIgKvpLlnaeqevelakrieaglfaedklansdklapklkreleiiaedgrraknhlleaNlRLvVslakrYTgRgmlFldliqegnlgliravekfdytKgYkfSTYaTWWiRQaiTRamadqartiripVHmvevinklarvqrqmlqdlgreptpeelakeldmtpekvievqkygrepislhtpLgEdgDsefgdliedseavvpadavsftllqeqlhsvldtlsereagvvsmrfgltdgqpktldeigkvygvTRERiRqiesktmsklrhpsrsqvlrdyl > 7vpz_M interface=6,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7vpz_N interface=6,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga
interface signature	RRIWEIRREPETFLERV/QAPQT/VKLIKLNRLVYTRFKYSTYTWWRQTRVHLEDTRERR/RTTR/RTTR

Estimated binding specificities ?

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# IC=37.177 IC/col=0.496 n_of_columns=75

specificity:

A |   8  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  96   0   0   0   0   0  96   0   0  96  13  24  96  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  96  96  24  24  24  24   0  24  24  24   8   0  72  24  24  24  24  24  24  24  24   0   0  24  24  24   4
C |  69  24  24  24  24  24  24  24  24  24  24  96   0  96  96  24   0  96   0   0   0  96   0   0   0   0  56  24   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96   0   0  24  24  24  24   0  24  24  24  11   0   8  24  24  24  24  24  24  24  24   0  96  24  24  24   6
G |  11  24  24  24  24  24  24  24  24  24  24   0  96   0   0  24   0   0  96  96   0   0   0  96   0   0  13  24   0  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96  96   0   0   0  24  24  24  24  96  24  24  24   8  96   8  24  24  24  24  24  24  24  24   0   0  24  24  24   4
T |   8  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24   0   0   0   0  96   0   0   0  96   0  14  24   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0   0   0  24  24  24  24   0  24  24  24  69   0   8  24  24  24  24  24  24  24  24  96   0  24  24  24  82

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updated Wed Sep 11 15:28:31 2024