7vru_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PACII_M1M2S-DNA-SAH COMPLEX
reference	Zhu et al.
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;DNA methylase specificity domain;
reference complex	7vru_A 7vru_B 7vru_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vru_A interface=170,280,369,401, mtlinlkdleahlwhaahiitgpidasdyktyifpilffkricdvydeefqdvlakvgsaelarekifhriqvplgchwddvfaknhdigkalkdaflgieqanaplhgifgdaswtnkerlpdellatllnhfnqvnlgvasvrnddmgrayeylikrfadkankkagEfytprtivrlmvnildpqagesvydpacgtggmlletihhvrenagdprllklkgqeknltteaiarmnlflhgqedfeivrgdtlrdpkfliydrletfdcvianppfSlsewgheqwaadaygrnkyglapktngdfawvqhmfaslndngrmavvlphgvlfrgaaegrirtsllkenrieaiigvapnlfygtaIpacilllrkqrpkahrdhvliinaeeiftkgRaqntlsngqadqiyqtylqqyqqgpdaqplegvarwvplseiaendfnlniaryvqkpleetitveealkdfqqklaaleqaeqeleellikegfe > 7vru_B interface=20,24,27,172,174,279,282,367,371,372,404, eyqqhqasrlgkkkledllWgaaEflRgqidasdykqyifpllfykrlsdvyleeysenegdasyaampmfhrfhipqearwekvrdtrknigkaiqnalrliethnerlhgvfgdaqwtnkerlpdhlladliqhfskiplgiksvaqddlgeayeylikkfaddsghtaAeFytnrtvvhlmtrimglkpgetaydptcgtggmllnavmdlrnegkewrsvklygqevnlltsaiarmnmflheieefevlrgdtlaepkfiegdqlkqfdvifaNppYsikkwnrdkfaadpygrnlygvppqgcadygfythiikslkpdtgraamlwphgvlfrdseqairkqviesdiieaviglgpnlFynsPMescvvvlncnkpaerkgkilfingvehvtreRahsrlsdddltvlieaysapdkqpaitalvdievirenqhnlsiplyvqaadneevhdiehaieawkvsrvqlkkqtsklfkslaelgye > 7vru_C interface=16,66,67,85,122,123,196,199,202,244,257,259,260,277,278,279,315,316,317,318, wqmvkfgdiakhiskRvepsetdldiyvglehldpdslkikrygvpsdvagqkllvkkgqiifgkRRayqrkvavadwdcicsaHamvleplsdkvipeflpffmqsdsfmnravaisegsLSptikwktlssqsflmpslttqatlikilskisevesslesaklslqllssafidelknwtivrageacslitKgaSprWqgfeyaadgslfvtseniqhwavdisspkyipdefseknlrRsqlragdvlvniVgASigrcalwdgshekaniNQAvallrpkpeldsrwllaqlyskrgqeyfglsavdnARPNlslkslsdfefylppieiqkktmdifelfsskvisnkkltlkaiksslvnn
interface signature	ESIR/WERAFNYFPMR/RRRHLSKSWRVASNQAARPN

Estimated binding specificities ?

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# IC=12.511 IC/col=0.782 n_of_columns=16

specificity:

A |   0   0  96  96   0  57  24  24  24   0   0   0   0  24  24  13
C |   0  96   0   0   0  13  24  24  24  96   0   0   0  24  24  13
G |  96   0   0   0   0  13  24  24  24   0  96  96  96  24  24  13
T |   0   0   0   0  96  13  24  24  24   0   0   0   0  24  24  57

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updated Wed Sep 11 15:32:10 2024