7vs4_ABC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PACII_M1M2S-DNA(M6A)-SAH COMPLEX
reference	Zhu et al.
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	S-adenosyl-L-methionine-dependent methyltransferases;
reference complex	7vru_A 7vru_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vs4_A interface=369,401, mtlinlkdleahlwhaahiitgpidasdyktyifpilffkricdvydeefqdvlakvgsaelarekifhriqvplgchwddvfaknhdigkalkdaflgieqanaplhgifgdaswtnkerlpdellatllnhfnqvnlgvasvrnddmgrayeylikrfadkankkagefytprtivrlmvnildpqagesvydpacgtggmlletihhvrenagdprllklkgqeknltteaiarmnlflhgqedfeivrgdtlrdpkfliydrletfdcvianppfslsewgheqwaadaygrnkyglapktngdfawvqhmfaslndngrmavvlphgvlfrgaaegrirtsllkenrieaiigvapnlfygtaIpacilllrkqrpkahrdhvliinaeeiftkgRaqntlsngqadqiyqtylqqyqqgpdaqplegvarwvplseiaendfnlniaryvqkpltitveealkdfqqklaaleqaeqeleellikegfe > 7vs4_B interface=172,174,279,282,367,371,372, ieyqqhqasrlgkkkledllwgaaeflrgqidasdykqyifpllfykrlsdvyleeyseegdasyaampmfhrfhipqearwekvrdtrknigkaiqnalrliethnerlhgvfgdaqwtnkerlpdhlladliqhfskiplgiksvaqddlgeayeylikkfaddsghtaAeFytnrtvvhlmtrimglkpgetaydptcgtggmllnavmdlrnegkewrsvklygqevnlltsaiarmnmflheieefevlrgdtlaepkfiegdqlkqfdvifaNppYsikkwnrdkfaadpygrnlygvppqgcadygfythiikslkpdtgraamlwphgvlfrdseqairkqviesdiieaviglgpnlFynsPMescvvvlncnkpaerkgkilfingvehvtrerahsrlsdddltvlieaysapdkqpaitalvdievirenqhnlsiplyvqaadneevhdiehaieawkvsrvqlkkqtsklfkslaelgye > 7vs4_C interface=16,66,67,85,122,123,200,203,206,248,261,263,264,281,282,283,319,320,321,322, wqmvkfgdiakhiskRvepsetdldiyvglehldpdslkikrygvpsdvagqkllvkkgqiifgkRRayqrkvavadwdcicsaHamvleplsdkvipeflpffmqsdsfmnravaisegsLSptikwktlssqsflmpslttqatlikilskisevesslesaklslqllssafidellnhdknwtivrageacslitKgaSprWqgfeyaadgslfvtseniqhwavdisspkyipdefseknlrRsqlragdvlvniVgASigrcalwdgshekaniNQAvallrpkpeldsrwllaqlyskrgqeyfglsavdnARPNlslkslsdfefylppieiqkktmdifelfsskvisnkkltlkaiksslvnns
interface signature	IR/AFNYFPM/RRRHLSKSWRVASNQAARPN

Estimated binding specificities ?

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# IC=9.739 IC/col=0.749 n_of_columns=13

specificity:

A |   0   0   0   0  24  24  24  19  96  24   0   0  10
C |  96  96  96   0  24  24  24  20   0  24   0   0  63
G |   0   0   0  96  24  24  24  19   0  24   0  96  10
T |   0   0   0   0  24  24  24  38   0  24  96   0  13

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updated Sun Dec 15 16:27:39 2024