7vup_AB : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO +1/-1 SWAP P-SELECTIN KB DNA FRAGMENT
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.40, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	7cli_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vup_A interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv > 7vup_B interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv
interface signature	RRYCESHK/RRYCESHK

Estimated binding specificities ?

readout + contact

# IC=10.165 IC/col=0.924 n_of_columns=11

specificity:

A |   6   0   0   6  76  24   8   0   0   0   0
C |   6   0   0   6  12  24   6  89  96  96  96
G |  78  96  90  76   8  24   6   6   0   0   0
T |   6   0   6   8   0  24  76   1   0   0   0

scan!

home
updated Sun Dec 17 14:08:34 2023