7vup_AB : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO +1/-1 SWAP P-SELECTIN KB DNA FRAGMENT
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.40, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	7cli_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vup_A interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv > 7vup_B interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv
interface signature	RRYCESHK/RRYCESHK

Estimated binding specificities ?

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# IC=10.020 IC/col=0.911 n_of_columns=11

specificity:

A |   0   0   0   0  78  24   6   6   6   0   0
C |   0   0   0   6   6  24  12  72  90  96  84
G |  96  96  96  84   6  24   6  12   0   0   6
T |   0   0   0   6   6  24  72   6   0   0   6

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updated Wed Sep 11 15:33:38 2024