| structure name | STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO P-SELECTIN KB DNA FRAGMENT (Nuclear factor NF-kappa-B p52 subunit) |
| reference | Meshcheryakov et al. 'To ? ? ? |
| source | Homo sapiens |
| experiment | X-ray (resolution=3.00, R-factor=?) |
| structural superfamily | p53-like transcription factors;E set domains; |
| sequence family | Rel homology domain RHD; IPT/TIG domain; |
| multimeric complexes | 7cli_AB 7vup_AB 7vuq_AB 7w7l_AB |
| redundant complexes | 7vup_A
7vuq_A
 7w7l_A
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RRYCESHK |
Estimated binding specificities ?
| readout + contact |  |
A | 3 0 2 1 C | 6 0 2 1 G | 82 96 88 86 T | 5 0 4 8scan! |
Dendrogram of similar interfaces ?
matrix formatRGRGYACCEC----SAHG------KG------------ L +7cli_B +-2 RGRGYA--EC------HG------KG------------ L +-----4 +7w7l_B ! ! RGRGYTCCEC------HG------KG------------ L ! +1a3q_A +-------------8 RCRCYC--EC------HC------KT------RG---- L ! ! +1svc_P ! ! +----1 RGRGYTCCEC------HTKT----KT--PTKTRG---- L ! ! ! +1nfk_A ! +-7 RGRGYTCCEC--------------KT------------ L ! ! +2v2t_A +-----10 +----5 RGRGYTCTEC--------------RT------------ L ! ! ! +1gji_A ! ! +-3 RGRG----EC--------------RG--PTKT------ L ! ! +2ram_A ! ! RGRG----EG--RG------------------------ L +-11 ! +-------------1bvo_A ! ! +-----9 RG--YT--TTEC----RG----------QA-------- L ! ! +-------------1imh_C ! ! RGRGYT--EC----------KTTTQART---------- L -12 ! +1a66_A ! +-------------------------6 RG--YT--TTEC----RG------QA------------ L ! +1p7h_L ! ----------------------------------RAVC L +----------------------------6vgd_D |
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updated Wed Dec 18 08:24:27 2024