7cli_B : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO P-SELECTIN KB DNA FRAGMENT (Nuclear factor NF-kappa-B p52 subunit)
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
sequence family	Rel homology domain RHD; IPT/TIG domain;
multimeric complexes	7cli_AB 7vup_AB 7vuq_AB 7w7l_AB
redundant complexes	7vup_A 7vuq_A 7w7l_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7cli_B interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv
interface signature	RRYCESHK

Estimated binding specificities ?

readout + contact

# IC=3.989 IC/col=0.997 n_of_columns=4

specificity:

A |   8   2   0   5
C |  85  89  95  81
G |   2   3   0   6
T |   1   2   1   4

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RGRGYTCTECHG----------   L     +-----------------------------2o61_B    
                               +-2 
  RGRGYTCCECHG--KG------   L   ! !                            +1a3q_A    
                             --3 +----------------------------1 
  RCRCYC--ECHC--KT----RG   L   !                              +1svc_P    
                               ! 
  RGRGYTCCECHTKTKTPTKTRG   L   +-----------------------------1nfk_A

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updated Sat Jan 10 14:37:51 2026