7vuq_AB : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO A/T-CENTRIC P-SELECTIN KB DNA FRAGMENT
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	7cli_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7vuq_A interface=19,21,22,24,25,28,29, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdskspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv > 7vuq_B interface=19,21,22,24,25,28,29,188, tadgpylviveqpkqrgfRfRYgCEgpSHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyplv
interface signature	RRYCESH/RRYCESHK

Estimated binding specificities ?

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# IC=9.474 IC/col=0.861 n_of_columns=11

specificity:

A |   0   0   0  13  13  24  59  20   0   0   0
C |   0   0   0  16   4  24   9  68  96  96  96
G |  96  96  96  54  15  24  18   4   0   0   0
T |   0   0   0  13  64  24  10   4   0   0   0

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updated Sun Dec 15 16:28:42 2024