7w7l_AB : 3D-footprint complex

structure name	STRUCTURE OF NF-KB P52 HOMODIMER BOUND TO 13-MER A/T-CENTRIC P- SELECTIN KB DNA FRAGMENT
reference	Meshcheryakov et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	p53-like transcription factors;E set domains;
reference complex	7cli_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7w7l_A interface=20,22,23,26,30,189, etadgpylviveqpkqrgfRfRYgcEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyy > 7w7l_B interface=19,21,22,25,29,188, tadgpylviveqpkqrgfRfRYgcEgpsHgglpgassekgrktyptvkicnyegpakievdlvthsdpprahahslvgkqcselgicavsvgpkdmtaqfnnlgvlhvtkknmmgtmiqklqrqrlrsrpqglteaeqreleqeakelkkvmdlsivrlrfsaflrasdgsfslplkpvisqpihdsKspgasnlkisrmdktagsvrggdevyllcdkvqkddievrfyeddengwqafgdfsptdvhkqyaivfrtppyhkmkierpvtvflqlkrkrggdvsdskqftyyp
interface signature	RRYEHK/RRYEHK

Estimated binding specificities ?

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# IC=11.573 IC/col=0.964 n_of_columns=12

specificity:

A |   8   0   0   0   0  17  24  61   0   0   0   0
C |   8   0   0   0   0   8  24   8  96  96  96  96
G |  19  96  96  96  96  19  24  10   0   0   0   0
T |  61   0   0   0   0  52  24  17   0   0   0   0

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updated Sun Dec 15 17:12:33 2024