7x74_CDFGHMN : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR TRANSCRIPTION INITIAL COMPLEX WITH TWO ZUR DIMERS
experiment	NMR
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7vo0_N 7vpz_N 7x74_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7x74_C interface=154,176,178,183,184,186,200,255,278,341,347,366,369,370,373,393,400,404,434,437,438,443, astaplrisfakikeplevpnllalqtesfdwllgndawkarvesalesgqdvptksgleeifeeispiedfsgsmsltfrdhrfeppknsideckdrdftyaaplfvtaeftnnetgeiksqtvfmgdfplmtnkgtfvingtervvvsqlvRspgvyfdssidktsdkdifsaKiIpsrgAWlEmeidkrdmvgvriDrkrkqsvtvllkalgwtteqileefgeyesmratlekdhtqgqddalldiyrklRpgepptreaaqtllenlyfnpkRydlakvgrykvnkklgadepldagvlttddviatikylvklhagetetvgesgreivvetddIdhfgnRrirnvgeliqnqvrtglaRmeRVvrErmttqdveaitpqtlinirPvvasikEffgTsqlsqfmdqnnplsglthkrrlnalgpggLsrERagfeVrdvhpshygrmcpietpegpnigligslasygrinpfgfietpyrkvvegqvtddvdyltadeedrfviaqanaalgddmrfaearvlvrrrggevdyvpgddvdymdvsprqmvsvatamipflehddanralmganmmrqavpliksesplvgtgmeyrsaadagdvvkaekagvvqevsadyitttnddgtyityrlakfsrsnqgtsvnqkvivaegdriiegqvladgpatengemalgknllvafmpweghnyedaiilsqrlvqddvlssihieehevdardtklgpeeitrdipnvseevladldergiirigaevvagdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgeigkvigvrvfdreegdelppgvnqlvrvyvaqkrkitdgdklagrhgnkgviskinpiedmpfledgtpvdiilnplavpsrmnpgqvleihlgwlasrgwdvsglaeewaqrlqvigadkvepgtnvatpvfdgaredelagllqhtipnrdgermvlpsgkarlfdgrsgepfpepisvgymyilklhhlvddklharstgpysmitqqplggkaqfggqrfgemevwaleaygaayalqelltiksddvtgrvkvyeaivkgenipepgipesfkvlikemqslclnvevlssdgmsie > 7x74_D interface=495,856,857, fdelriglataddirqwshgevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekviyfaaymitfvdeerrtrdlpsleahvsverqqieqrrdsdlearakkletdlaeleaegakadvrrkvregaeremkqlrdraqreidrldevwnrfknlkvqdlegdellyrelrdrfgtyfdgsmgaaalqkrlesfdldeeaerlreiirtgkgqkktralkrlkvvsaflqtsnspkgmvldcvpvippdlrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapeiivnnekrmlqeavdalfdngrrgrpvtgpgnrplkslsdmlkgkqgrfrqnllgkrvdysarsvivvgpqlklhqcglpkamalelfkpfvmkrlvdlnhaqniksakrmvergrtvvydvleeviaehpvllnrAptlhrlgiqafepqlvegkaiqihplvctafnadfdgdqmavhlplsaeaqaearilmlssnnilkpadgrpvtmptqdmvlglfflttdsegrspkgegrafgssaeaimafdagdltlqakidirfpvgtipprgfeppareegepewqqgdtftlkttlgralfnellpedypfvdyevgkkqlseivndlaerypkvivaatldnlkaagffwatrsgvtvaisdivvpdakkeivkgyegqdekvqkqyerglitkeertqeliaiwtkatnevaeamndnfpktnpvsmmvnsgargnmmqmrqiagmrglvsnaknetiprpikasfreglsvleyfisthgarkgladtalrTAdsgyltrrlvdvsqdviireedcgterglklpiatrdadgtlrkaedvetsvyarmlaedvvidgkviapanvdlgdvlidalvahgveevktrsiltcesqvgtcamcygrslatgklvdigeavgiiaaqsigepgtqltmrtfhtggvagdditqglprvvelfeartpkgvapiseasgrvrieetektkkivvtpddgsdetafpiskrarllvgegdhvevgqkltvgatnphdvlrilgqravqvhlvgevqkvynsqgvsihdkhieiiirqmlrrvtiiesgdaellpgelvertkfetenrrvvqegghpasgrpqlmgitkaslateswlsaasfqettrvltdaainaksdsliglkenviigklipagtglsryrnirvepteeakaam > 7x74_F interface=3,4,7,10,12,15,16,70,72,73,80,81,84,88,110,112,115,116,119,120,123,124,127,141,142,198,200,209,261,270,271,272,273,275, dpVKdyLkqIgKvpLLnaeqevelakrieaglfaedklansdklapklkreleiiaedgrraknhlleaNlRLvvslakRYtgRgmlFldliqegnlgliravekfdytKgYkfSTyaTWwiRQaiTramadqartiripVHmvevinklarvqrqmlqdlgreptpeelakeldmtpekvievqkygrepislhtpLgEdgdsefgdLiedseavvpadavsftllqeqlhsvldtlsereagvvsmrfgltdgqpktlDeigkvygvTRERiRqiesktmsklrhpsrsqvlrdyl > 7x74_G interface=6,44,48,66,68, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTtvyRtlqsladagevdvlrtaEgEsvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x74_H interface=28,44,45,47, ppvkgratrqraavsaalqeveefrsaQelhdmlkhkgdavglTTvYrtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x74_M interface=44,48, ppvkgratrqraavsaalqeveefrsaqelhdmlkhkgdavglTtvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x74_N interface=6,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga
interface signature	RKIAWEDRRIRRRVEPETLERV/ATA/VKLIKLLNRLRYRFKYSTTWRQTVHLELDTRERR/RTREE/QTTY/TR/RTTR

Estimated binding specificities ?

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# IC=42.513 IC/col=0.675 n_of_columns=63

specificity:

A |   0   0   0   0   5  96   0   0   0   0   0  96   0   0  96   1  24  90  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  96  63  24   8   0   0  24  24  96  24  24  24  86  24  82   0  13   0  24  24   0   0  24  24  24   4
C |  96   0  96  96   5   0  96   0   0   0  96   0   0   0   0  90  24   3  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96   0  13  24   5  96   0  24  24   0  24  24  24   4  24   3  96  61   0  24  24   0  96  24  24  24   1
G |   0  96   0   0   5   0   0  96  96   0   0   0  96   0   0   4  24   2  24  82  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96  96   0   0  11  24  78   0  96  24  24   0  24  24  24   3  24   8   0  13  96  24  24   0   0  24  24  24   1
T |   0   0   0   0  81   0   0   0   0  96   0   0   0  96   0   1  24   1  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0   0   9  24   5   0   0  24  24   0  24  24  24   3  24   3   0   9   0  24  24  96   0  24  24  24  90

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updated Wed Sep 11 16:38:18 2024