7x76_CDFGHMN : 3D-footprint complex

Interface of input file ?

structure name	CRYO-EM STRUCTURE OF STREPTOMYCES COELICOLOR RNAP-PROMOTER OPEN COMPLEX WITH TWO ZUR DIMERS
experiment	NMR
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	7vo0_N 7vpz_N 7x74_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7x76_C interface=146,154,178,179,184,186,278,341,347,366,373,392,393,400,404,409,410,434,437,438,443, astaplrisfakikeplevpnllalqtesfdwllgndawkarvesalesgqdvptksgleeifeeispiedfsgsmsltfrdhrfeppknsideckdrdftyaaplfvtaeftnnetgeiksqtvfmgdfplmtnkgtfvingteRvvvsqlvRspgvyfdssidktsdkdifsakiIPsrgaWlEmeidkrdmvgvridrkrkqsvtvllkalgwtteqileefgeyesmratlekdhtqgqddalldiyrklrpgepptreaaqtllenlyfnpkRydlakvgrykvnkklgadepldagvlttddviatikylvklhagetetvgesgreivvetddIdhfgnRrirnvgeliqnqvrtglaRmervvrErmttqdveaitpqtliniRPvvasikEffgTsqlsQFmdqnnplsglthkrrlnalgpggLsrERagfeVrdvhpshygrmcpietpegpnigligslasygrinpfgfietpyrkvvegqvtddvdyltadeedrfviaqanaalgddmrfaearvlvrrrggevdyvpgddvdymdvsprqmvsvatamipflehddanralmganmmrqavpliksesplvgtgmeyrsaadagdvvkaekagvvqevsadyitttnddgtyityrlakfsrsnqgtsvnqkvivaegdriiegqvladgpatengemalgknllvafmpweghnyedaiilsqrlvqddvlssihieehevdardtklgpeeitrdipnvseevladldergiirigaevvagdilvgkvtpkgeteltpeerllraifgekarevrdtslkvphgeigkvigvrvfdreegdelppgvnqlvrvyvaqkrkitdgdklagrhgnkgviskinpiedmpfledgtpvdiilnplavpsrmnpgqvleihlgwlasrgwdvsglaeewaqrlqvigadkvepgtnvatpvfdgaredelagllqhtipnrdgermvlpsgkarlfdgrsgepfpepisvgymyilklhhlvddklharstgpysmitqqplggkaqfggqrfgemevwaleaygaayalqelltiksddvtgrvkvyeaivkgenipepgipesfkvlikemqslclnvevlssdgmsie > 7x76_D interface=383,421,495,496,534,856, fdelriglataddirqwshgevkkpetinyrtlkpekdglfcekifgptrdwecycgkykrvrfkgiicercgvevtrakvrrermghielaapvthiwyfkgvpsrlgylldlapkdlekviyfaaymitfvdeerrtrdlpsleahvsverqqieqrrdsdlearakkletdlaeleaegakadvrrkvregaeremkqlrdraqreidrldevwnrfknlkvqdlegdellyrelrdrfgtyfdgsmgaaalqkrlesfdldeeaerlreiirtgkgqkktralkrlkvvsaflqtsnspkgmvldcvpvippdlrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapeiivnnekrmlqeavdalfdngrrgRpvtgpgnrplkslsdmlkgkqgrfrqnllgkrvdysaRsvivvgpqlklhqcglpkamalelfkpfvmkrlvdlnhaqniksakrmvergrtvvydvleeviaehpvllnrAPtlhrlgiqafepqlvegkaiqihplvctafnadfdgdQmavhlplsaeaqaearilmlssnnilkpadgrpvtmptqdmvlglfflttdsegrspkgegrafgssaeaimafdagdltlqakidirfpvgtipprgfeppareegepewqqgdtftlkttlgralfnellpedypfvdyevgkkqlseivndlaerypkvivaatldnlkaagffwatrsgvtvaisdivvpdakkeivkgyegqdekvqkqyerglitkeertqeliaiwtkatnevaeamndnfpktnpvsmmvnsgargnmmqmrqiagmrglvsnaknetiprpikasfreglsvleyfisthgarkgladtalrTadsgyltrrlvdvsqdviireedcgterglklpiatrdadgtlrkaedvetsvyarmlaedvvidgkviapanvdlgdvlidalvahgveevktrsiltcesqvgtcamcygrslatgklvdigeavgiiaaqsigepgtqltmrtfhtggvagdditqglprvvelfeartpkgvapiseasgrvrieetektkkivvtpddgsdetafpiskrarllvgegdhvevgqkltvgatnphdvlrilgqravqvhlvgevqkvynsqgvsihdkhieiiirqmlrrvtiiesgdaellpgelvertkfetenrrvvqegghpasgrpqlmgitkaslateswlsaasfqettrvltdaainaksdsliglkenviigklipagtglsryrnirvepteeakaam > 7x76_F interface=6,7,10,13,15,18,73,75,76,83,84,85,87,91,113,115,118,119,120,122,123,124,127,130,131,144,145,148,203,206,274,275,276,278,279, atadpVKdyLkqIgKvpLlnaeqevelakrieaglfaedklansdklapklkreleiiaedgrraknhlleaNlRLvvslakRYTgRgmlFldliqegnlgliravekfdytKgYkfSTYaTWWirQaiTRamadqartiripVHmvEvinklarvqrqmlqdlgreptpeelakeldmtpekvievqkygrepislhtplgEdgDsefgdliedseavvpadavsftllqeqlhsvldtlsereagvvsmrfgltdgqpktldeigkvygvtRERiRQiesktmsklrhpsrsqvlrdyl > 7x76_G interface=6,44,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTtvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x76_H interface=6,28,43,44,45,47, ppvkgRatrqraavsaalqeveefrsaQelhdmlkhkgdavgLTTvYrtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x76_M interface=44,45,48, ppvkgratrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga > 7x76_N interface=6,44,45,48, ppvkgRatrqraavsaalqeveefrsaqelhdmlkhkgdavglTTvyRtlqsladagevdvlrtaegesvyrrcstgdhhhhlvcracgkavevegpavekwaeaiaaehgyvnvahtveifgtcadcaga
interface signature	RRIPWERIRRERPETQFLERV/RRAPQT/VKLIKLNRLRYTRFKYSTYTWWQTRVHEEDRERRQ/RTR/RQLTTY/TTR/RTTR

Estimated binding specificities ?

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# IC=48.095 IC/col=0.751 n_of_columns=64

specificity:

A |   0   0   0   0   3  93   0   0   0  96   0   0   0  96  96   1   0  94  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  24  24   1   0   0   9   7  96   7   1   0  71  24  24  94   0   7   0  24  24   0   0  24  24  24   1
C |  96  96   0  96   4   1  96   0   0   0   0   0  96   0   0  92   1   0  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96  24  24  24   0  96   0   9  72   0  72   1   0   9  24  24   0  96  79   0  24  24   0  96  24  24  24   1
G |   0   0  96   0   1   1   0  96  96   0  96   0   0   0   0   1   0   0  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  96  96  96   0  24  24  24  94   0  96  69   8   0  10   0  96   7  24  24   1   0   5  96  24  24   0   0  24  24  24   2
T |   0   0   0   0  88   1   0   0   0   0   0  96   0   0   0   2  95   2  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  24  24  24   1   0   0   9   9   0   7  94   0   9  24  24   1   0   5   0  24  24  96   0  24  24  24  92

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updated Wed Sep 11 16:42:31 2024