7xvn_CD : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR DNA RECOGNITION FEATURE OF RETINOID-RELATED ORPHAN RECEPTORS
reference	Jiang et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	7xvn_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xvn_C interface=23,26,30,31,75,77, evipckicgdkssgihygvitcEgcKgffRRsqqcaysctrqqncpidrtsrnrcqhcrlqkclalgmsrdavkFgRmskk > 7xvn_D interface=22,25,29,30, vipckicgdkssgihygvitcEgcKgffRRsqqvaysctrqqncpidrtsrnrcqhcrlqkclalgmsr
interface signature	EKRRFR/EKRR

Estimated binding specificities ?

readout + contact

# IC=9.907 IC/col=0.762 n_of_columns=13

specificity:

A |  13   0  68   0   0  24  24  24   6   0  68   0   0
C |   6   0   6  96  96  24  24  24   9   0  13  96  96
G |  16  96  16   0   0  24  24  24   6  96   9   0   0
T |  61   0   6   0   0  24  24  24  75   0   6   0   0

scan!

home
updated Sun Dec 15 18:59:03 2024