7xvn_C : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR DNA RECOGNITION FEATURE OF RETINOID-RELATED ORPHAN RECEPTORS (Nuclear receptor ROR-gamma)
reference	Jiang et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=2.30, R-factor=0.212)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
multimeric complexes	7xvn_CD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xvn_C interface=23,26,30,31,75,77, evipckicgdkssgihygvitcEgcKgffRRsqqcaysctrqqncpidrtsrnrcqhcrlqkclalgmsrdavkFgRmskk
interface signature	EKRRFR

Estimated binding specificities ?

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# IC=4.007 IC/col=0.801 n_of_columns=5

specificity:

A |   0   0   9   9  67
C |   0   0  11  69   9
G |  96  96   9   9   9
T |   0   0  67   9  11

scan!

Dendrogram of similar interfaces ?

matrix format

  
  CAECKG--KGRG----RTRT   L                         +---1cit_A    
                                     +-------------2 
  --EAKG--KTRG--------   L   +-------4             +---4umm_A    
                             !       ! 
  ----KGVT--RG--RC----   L   !       +-----------------2c7a_B    
                           --6 
  --EAKG--RTRTRT------       !                       +-4umm_E    
                             !  +--------------------1 
  --ECKGAG--RG--------   L   !  !                    +-4ond_A    
                             +--5 
  --ECKG----RA--------   L      !                 +----5krb_G    
                                +-----------------3 
  --ECKGAGKT----------   L                        +----4aa6_B

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updated Sat Jan 10 20:38:38 2026