7xvn_C : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR DNA RECOGNITION FEATURE OF RETINOID-RELATED ORPHAN RECEPTORS (Nuclear receptor ROR-gamma)
reference	Jiang et al. 'To ? ? ?
source	Mus musculus
experiment	X-ray (resolution=2.30, R-factor=0.212)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
sequence family	Zinc finger, C4 type two domains;
multimeric complexes	7xvn_CD
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7xvn_C interface=23,26,30,31,75,77, evipckicgdkssgihygvitcEgcKgffRRsqqcaysctrqqncpidrtsrnrcqhcrlqkclalgmsrdavkFgRmskk
interface signature	EKRRFR

Estimated binding specificities ?

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# IC=3.968 IC/col=0.794 n_of_columns=5

specificity:

A |   0   0  11   9  67
C |   0   0   9  67   9
G |  96  96   9   9  11
T |   0   0  67  11   9

scan!

Dendrogram of similar interfaces ?

matrix format

  
  CAECKG--KGRG----RTRT   L                     +----1cit_A    
                                +--------------5 
  ----KGVT--RG--RC----   L      !              +----2c7a_B    
                                ! 
  --EAKG--RTRTRT------       +--7                 +-4umm_E    
                             !  !       +---------3 
  --EAKG--KTRG--------   L   !  !       !         ! +4umm_A    
                             !  !       !         +-1 
  ----KGVG--RG--------   L   !  +-------6           +4tnt_B    
                           --8          ! 
  --ECKGAGKT----------   L   !          !          +4aa6_B    
                             !          +----------2 
  ----KGVT--RG--------   L   !                     +5emc_A    
                             ! 
  --ECKG----RA--------   L   !                 +----5krb_G    
                             +-----------------4 
  --ECKGAG--RG--------   L                     +----4ond_A

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updated Tue Jun 30 11:54:00 2026