7y7i_E : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7bxt_ABCDEFGHMN 7by0_ABCDEFGH 7y7i_ABCDEFGH
redundant complexes	7bxt 7by0
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7y7i_E interface=2,3, pHRyrpgtvalreirryqkstellirrqpfarvvreicllftrgvdyrwqamallalqeaaeaflvhlledaylcslharrvtlypkdlqlarrlrg

  
  --RT----LARG                               +---------7unc_a    
                                   +---------5 
  ----------RT                  +--7         +---------7lyb_G    
                                !  ! 
  --RG----LC--             +----9  +-------------------8bvw_e    
                           !    ! 
  --RG--------             !    +----------------------6a5l_e    
                           !  
  --RA----LTRC             !                                   +6jm9_A    
                           !                           +-------1 
  HTRG------RT             !                +----------4       +8g57_E    
                           !                !          ! 
  ----------RC             !                !          +-------6qld_f    
                           !             +--6 
  --------LT--             !             !  !            +-----7ywx_E    
                        +-14             !  +------------3 
  ----------RA          !  !           +-8               !   +-7xsx_a    
                        !  !           ! !               +---2 
  ------RG----          !  !           ! !                   +-7k6p_D    
                        !  !        +-10 ! 
  --RT------RG          !  !        !  ! +---------------------7uv9_E    
                        !  !     +-11  !  
  --RGYA--LCRT       +-15  !     !  !  +----------------------8byq_e    
                     !  !  !  +-12  !  
  --RG------RG       !  !  !  !  !  +-----------------------7yqk_E    
                     !  !  +-13  !  
  --RG------RT       !  !     !  +------------------------8cww_A    
                   -16  !     !  
  HARA----LTRC       !  !     +---------------------------3kwq_E    
                     !  !  
  --RA--------       !  +-----------------------------6kxv_A    
                     !  
  ----------RA       +-----------------------------1kx5_G

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updated Tue Dec 19 23:56:21 2023