interface graph thumbnail
legend  pdf

structure nameTR-SFX MMCPDII-DNA COMPLEX: 1 NS SNAPSHOT. INCLUDES 1 NS, DARK, AND EXTRAPOLATED STRUCTURE FACTORS
(Deoxyribodipyrimidine photo-lyase)
referenceNgura Putu et al. Science 382 eadd7795 2023
sourceMethanosarcina mazei
experimentX-ray (resolution=2.25, R-factor=0.232)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
reference complex7yc7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRWRR

Estimated binding specificities ?

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# IC=4.007 IC/col=0.801 n_of_columns=5 specificity:   
A |   0   0   9  11   9
C |  96  96  11  67   9
G |   0   0  67   9  69
T |   0   0   9   9   9
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updated Fri Jan 9 19:47:41 2026