interface graph thumbnail
legend  pdf

structure nameDARK, FULLY REDUCED STRUCTURE OF THE MMCPDII-DNA COMPLEX AS PRODUCED AT SWISSFEL
(Deoxyribodipyrimidine photo-lyase)
referenceNgura Putu et al. Science 382 eadd7795 2023
sourceMethanosarcina mazei
experimentX-ray (resolution=1.95, R-factor=0.155)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
redundant complexes2xrz_B 5zcw_B 7ycm_B 7ycp_A 7ycr_A 7yd6_B 7yd7_B 7yd8_A 7ydz_B 7ye0_A 7yeb_B 7yec_A 7yee_B 7yei_B 7yej_B 7yek_A 7yel_B 7yem_A 8kcm_B 8oet_A 8oy3_B 8oy4_B 8oy5_A 8oy6_A 8oy7_A 8oy8_B 8oy9_B 8oya_A 8oyb_A 8oyc_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRWRR

Estimated binding specificities ?

contactlogo
# IC=4.250 IC/col=0.850 n_of_columns=5 specificity:   
A |   0   0  12  12  12
C |  96  96  12  84  12
G |   0   0  60   0  60
T |   0   0  12   0  12
scan!

home
updated Sun Aug 3 21:36:37 2025