interface graph thumbnail
legend  pdf

structure nameTR-SFX MMCPDII-DNA COMPLEX: 3.35 NS SNAPSHOT. INCLUDES 3.35 NS, DARK, AND EXTRAPOLATED STRUCTURE FACTORS
(Deoxyribodipyrimidine photolyase)
referenceNgura Putu et al. Science 382 eadd7795 2023
sourceMethanosarcina mazei
experimentX-ray (resolution=2.20, R-factor=0.232)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
reference complex7yc7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRNEWMWRWR

Estimated binding specificities ?

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# IC=5.178 IC/col=1.294 n_of_columns=4 specificity:   
A |   0   0   0   1
C |  96   0   0  93
G |   0   0   0   1
T |   0  96  96   1
scan!

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updated Fri Jan 9 19:49:05 2026