interface graph thumbnail
legend  pdf

structure nameTR-SFX MMCPDII-DNA COMPLEX: 10 NS SNAPSHOT. INCLUDES 10 NS, DARK, AND EXTRAPOLATED STRUCTURE FACTORS. COLLECTED AT SWISSFEL
(Deoxyribodipyrimidine photolyase)
referenceNgura Putu et al. Science 382 eadd7795 2023
sourceMethanosarcina mazei
experimentX-ray (resolution=2.15, R-factor=0.239)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
reference complex7yc7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRNEWMWRWRR

Estimated binding specificities ?

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# IC=5.807 IC/col=0.830 n_of_columns=7 specificity:   
A |  16  13  24   0  96  96   0
C |  54  13  24   0   0   0   0
G |  13  57  24  96   0   0  96
T |  13  13  24   0   0   0   0
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updated Fri Jan 9 19:49:23 2026