interface graph thumbnail
legend  pdf

structure nameTR-SFX MMCPDII-DNA COMPLEX: 100 NS TIME-POINT COLLECTED IN SACLA. INCLUDES 100 NS, DARK, AND EXTRAPOLATED STRUCTURE FACTORS
(Deoxyribodipyrimidine photo-lyase)
referenceNgura Putu et al. Science 382 eadd7795 2023
sourceMethanosarcina mazei
experimentX-ray (resolution=2.55, R-factor=0.204)
structural superfamilyCryptochrome/photolyase FAD-binding domain;Cryptochrome/photolyase, N-terminal domain;
sequence familyFAD binding domain of DNA photolyase;
reference complex7yc7_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureHRNEWMWRWRR

Estimated binding specificities ?

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# IC=7.099 IC/col=0.887 n_of_columns=8 specificity:   
A |   0   0   0   0  24   0  16  16
C |  96   0   0  96  24  96  13  54
G |   0   0   0   0  24   0  54  13
T |   0  96  96   0  24   0  13  13
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updated Fri Jan 9 19:49:50 2026