Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE HUMAN CCAN CENP-A ALPHA-SATELLITE COMPLEX
(HISTONE H3-LIKE CENTROMERIC PROTEIN A)
sourceHOMO SAPIENS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes3an2_ABCDEFGH 3wtp_ABCDEFGH 6buz_ABCDEFGHN 6c0w_ABCDEFGHK 6l49_ABCDEFGHKLMNOPQRSTUVWXYZ 6se0_ABCDEFGH 6se6_ABCDEFGH 6see_ABCDEFGH 6sef_ABCDEFGH 6seg_ABCDEFGH 6tem_ABCDEFGH 7d20_ABCDEFGH 7pii_ABCDEFGH 7r5r_ABCDEFGH 7u46_ABCDEFGHK 7u47_ABCDEFGHK 7u47_LMNOPQRSV 7u4d_ABCDEFGHK 7u4d_LMNOPQRS 7ywx_ABCDEFGLNVW
redundant complexes6se0_A 3an2 3wtp 6buz 6c0w 6l49 6se6 6see 6sef 6seg 6tem 7d20 7pii 7r5r 7u46 7u47 7u4d
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  LC------                              +8bvw_e    
                         +--------------1 
  --RT----               !              +8grq_A    
                    +----8 
  LARG----          !    !             +7unc_a    
                 +-12    +-------------5 
  LCRT----       !  !                  +8hr1_E    
                 !  !  
  --RG----       !  +-------------------5x0y_G    
                 !  
  --RA----       !                  +--7xsx_a    
                 !     +------------7 
  ----RA--     -13     !            !  +6g0l_D    
                 !     !            +--3 
  --RC----       !  +-10               +6qld_f    
                 !  !  !  
  --RG----       !  !  !               +8txv_G    
                 !  !  +---------------4 
  --RA--RA       +-11                  +6a5l_g    
                    !  
  --RT----          !                  +8u14_G    
                    !   +--------------2 
  --RG----          !   !              +8ox0_C    
                    +---9 
  --RA----              !             +1zla_C    
                        +-------------6 
  --RG----                            +8jla_C

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updated Wed Dec 18 14:47:57 2024