7yza_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE ZEBRAFISH FOXH1 BOUND TO THE TGTGTATT SITE (Forkhead box protein H1)
reference	Macias et al. 'To ? ? 2022
source	Danio rerio
experiment	X-ray (resolution=1.18, R-factor=0.141)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Fork head domain;
reference complex	7yz7_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7yza_A interface=3,5,7,56,57,59,60,61,63,65,81, kkKnYqRypkppysylamiamviqnspekkltlseilkeistlfpffkgnykgwrDSvRHNlSsYdcfvkvlkdpgkpqgKgnfwtvevnriplellkrqntavsrqdetifaqdlapyifq
interface signature	KYRDSRHNSYK

Estimated binding specificities ?

readout + contact

# IC=9.237 IC/col=1.026 n_of_columns=9

specificity:

A |   0   0   0   0  11  96   0   2   8
C |   0   0   8   0   8   0   9   8  17
G |   0  96   0  96   8   0   0   8  71
T |  96   0  88   0  69   0  87  78   0

scan!

home
updated Fri Sep 13 09:21:23 2024