7z1z_DEIN : 3D-footprint complex

structure name	MVV STRAND TRANSFER COMPLEX (STC) INTASOME IN COMPLEX WITH LEDGF/P75 AT 3.5 A RESOLUTION
source	VISNA/MAEDI VIRUS EV1 KV1772
experiment	NMR
structural superfamily	Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex	7u32_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7z1z_D interface=207, wieniplaeeehnkwhqdavslhlefgiprtaaedidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkRghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7z1z_E interface= wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqEkirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfi > 7z1z_I interface=148,151,154,155, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpQsqAlvERthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7z1z_N interface= niplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlknTleKliPMfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk
interface signature	R/E/QAER/TKPM

Estimated binding specificities ?

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# IC=5.273 IC/col=0.659 n_of_columns=8

specificity:

A |   6  75  24  24  20   0   0   0
C |   9   6  24  24   6  96   0  96
G |  75   9  24  24  13   0  89   0
T |   6   6  24  24  57   0   7   0

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updated Sun Dec 15 20:35:13 2024