7z1z_DEIN : 3D-footprint complex

structure name	MVV STRAND TRANSFER COMPLEX (STC) INTASOME IN COMPLEX WITH LEDGF/P75 AT 3.5 A RESOLUTION
source	VISNA/MAEDI VIRUS EV1 KV1772
experiment	NMR
structural superfamily	Ribonuclease H-like;N-terminal Zn binding domain of HIV integrase;DNA-binding domain of retroviral integrase;
reference complex	7u32_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7z1z_D interface=207, wieniplaeeehnkwhqdavslhlefgiprtaaedidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkRghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7z1z_E interface= wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqEkirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfi > 7z1z_I interface=148,151,154,155, wieniplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkmpstlrgsnkrgidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpQsqAlvERthqtlkntleklipmfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk > 7z1z_N interface= niplaeeehnkwhqdavslhlefgiprtaaedivqqcdvcqenkidhwqvdythyedkiilvwvetnsgliyaervkgetgqefrvqtmkwyamfapkslqsdngpafvaestqllmkylgiehttgipwnpqsqalverthqtlknTleKliPMfnafesalagtlitlnikrkgglgtspmdififnkeqqriqqqskskqekirfcyyrtrkrghpgewqgptqvlwggdgaivvkdrgtdrylviankdvkfipppk
interface signature	R/E/QAER/TKPM

Estimated binding specificities ?

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# IC=5.103 IC/col=0.638 n_of_columns=8

specificity:

A |   0   7   0  68  24  24   7   0
C |   0  73   0   7  24  24   7  82
G |  96   7  96   7  24  24   9   7
T |   0   9   0  14  24  24  73   7

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updated Sun Dec 17 18:02:26 2023