7z4d_E : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SPCAS9 BOUND TO A 10 NUCLEOTIDE COMPLEMENTARY DNA SUBSTRATE (CRISPR-associated endonuclease Cas9Csn1)
reference	Pacesa et al. Nature 609 191 2022
source	Streptococcus pyogenes
experiment	X-ray (resolution=3.10, R-factor=0.248)
multimeric complexes	7v59_BE
reference complex	6vpc_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7z4d_E interface=168,449,490,494,648,819,905,906,1017,1130,1131,1133, dkkysiglaigtnsvgwavitdeykvpskkfkvlgntdrhsikknligallfdsgetaeatrlkrtarrrytrrknricylqeifsnemakvddsffhrleesflveedkkherhpifgnivdevayhekyptiyhlrkklvdstdkadlrliylalahmikfrghfLiegdlnpdnsdvdklfiqlvqtynqlfeenpinasgvdakailsarlsksrrlenliaqlpgekknglfgnlialslgltpnfksnfdlaedaklqlskdtydddldnllaqigdqyadlflaaknlsdaillsdilrvnteitkaplsasmikrydehhqdltllkalvrqqlpekykeiffdqskngyagyidggasqeefykfikpilekmdgteellvklnredllrkqrtfdngsiphqihlgelhailrrqedfypflkdnrekiekiltfripYyvgplargnsrfawmtrkseetitpwnfeevvdkgasaqsFierMtnfdknlpnekvlpkhsllyeyftvyneltkqkkaivdllflkedyfkkiecfslgtyhdllkiikdkdfldneenediledivltltlfedremieerlktyahlfddkvmkqlkrrrytgwgrlsrklinirdkqsgktildflksanrnfMqlihdslhehianlagspaikkgilqtvkvvdelvkvmgrhkpeniviemaaivpqsflkddsidnkseldkagfikrqlvetrqitkhvaqildsrmntkydendklirevkvitlksklvsdfrkdfqfykvreinnyhhahdaylnavvgtalikkypklesefvygDykvydmiakseqekyffysnimnffkteitlangeirkrplietngetgeivwdkgrdfatvrkvlsmpqvnivkktevqtggfsKEsilpkrnsdkliarkkdwdpkkyggfdsptvaysvlvvakvekgkskklksvkellgitimerssfeknpidfleakgykevkkdliiklpkyslfelengrkrmlasagElqkgnelalpskyvnflylashyeklkgspedneqkqlfveqhkhyldeiieqisefskrviladanldkvlsaynkhrdkpireqaeniihlftltnlgapaafkyfdttiDRkRytstkevldatlihqsitglyetridlsqlggd
interface signature	LYFMMDKEEDRR

Estimated binding specificities ?

contact

# IC=6.530 IC/col=0.544 n_of_columns=12

specificity:

A |   0   8  69  24  24  24  24  24  10   0   0   0
C |  96   8  11  24  24  24  24  24  17   0   0   0
G |   0  17   8  24  24  24  24  24   8   0  96  96
T |   0  63   8  24  24  24  24  24  61  96   0   0

scan!

home
updated Fri Jan 9 20:08:33 2026