7zn5_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C2 SYMMETRY.
experiment	NMR
structural superfamily	PLP-dependent transferases;"Winged helix" DNA-binding domain;
reference complex	7zla_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zn5_A interface=29,38,39,40,43,60, plyeqlyahikteitegrigygtklpskRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf > 7zn5_B interface=33,34,43,44,45,48,65, rdlptplyeqlyahikteitegrigygtklpsKRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	RSQNER/KRSQNER

Estimated binding specificities ?

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# IC=11.094 IC/col=0.252 n_of_columns=44

specificity:

A |  87   3   0  24  84   3  24  84  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  80   3  24  24   0   5   0
C |   3  84   0  24   3  87  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   6   3  24  24   0   0   0
G |   3   6   0  24   3   3  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   6  24  24  96  88   0
T |   3   3  96  24   6   3  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   7  84  24  24   0   3  96

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updated Sat Jun 27 03:45:40 2026