7zn5_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C2 SYMMETRY.
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zn5_A interface=29,38,39,40,43,60, plyeqlyahikteitegrigygtklpskRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf > 7zn5_B interface=33,34,43,44,45,48,65, rdlptplyeqlyahikteitegrigygtklpsKRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	RSQNER/KRSQNER

Estimated binding specificities ?

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# IC=3.006 IC/col=0.064 n_of_columns=47

specificity:

A |  42  16   8  21  52  19  24  42  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  38  18  24  31   0  17  12  20  24  24
C |  18  45   8  23  14  39  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  19  18  24  21   0  15  12  36  24  24
G |  18  16  10  31  14  19  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  19  18  24  23  96  49  12  20  24  24
T |  18  19  70  21  16  19  24  18  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  20  42  24  21   0  15  60  20  24  24

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updated Sun Dec 17 18:29:39 2023