7zn5_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C2 SYMMETRY.
experiment	NMR
structural superfamily	PLP-dependent transferases;"Winged helix" DNA-binding domain;
reference complex	7zla_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zn5_A interface=29,38,39,40,43,60, plyeqlyahikteitegrigygtklpskRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf > 7zn5_B interface=33,34,43,44,45,48,65, rdlptplyeqlyahikteitegrigygtklpsKRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	RSQNER/KRSQNER

Estimated binding specificities ?

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# IC=11.164 IC/col=0.254 n_of_columns=44

specificity:

A |  96   0   0  24  24  84   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  24  12   0  24  96   4   4
C |   0  88  96  24  24   4   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  24   8   0  24   0   4   4
G |   0   4   0  24  24   4   4  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   4  24  72   0  24   0  84   4
T |   0   4   0  24  24   4  84  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  84  24   4  96  24   0   4  84

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updated Fri Aug 1 03:35:37 2025