7zn5_AB : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF HOLO-PDXR FROM BACILLUS CLAUSII BOUND TO ITS TARGET DNA IN THE CLOSED CONFORMATION, C2 SYMMETRY.
experiment	NMR
structural superfamily	PLP-dependent transferases;"Winged helix" DNA-binding domain;
reference complex	7zla_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7zn5_A interface=29,38,39,40,43,60, plyeqlyahikteitegrigygtklpskRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf > 7zn5_B interface=33,34,43,44,45,48,65, rdlptplyeqlyahikteitegrigygtklpsKRkladslklSQNtvEaayeqlvaegyvevipRkgfyvqayetirynfhpthidttsfpfeqwrkyfkqtmckenhrlllngdhqgeasfrreiayylhhsrgvnctpeqvvvgagvetllqqlflllgeskvygiedpgyqlmrkllshypndyvpfqvdeegidvdsivrtavdvvyttpsrhfpygsvlsinrrkqllhwaeahenryiieddydsefrytgktipslqsmdvhnkviylgafsslipsvrisymvlpaplahlyknkfsyyhstvsridqqvltafmkqgdfekhlnrmrkiyrrklekvlsllkryedklliigersglhivlvvkngmdeqtlvekalaakakvyplsaysleraihppqivlgfgsipedeleeaiatvlnawgf
interface signature	RSQNER/KRSQNER

Estimated binding specificities ?

contact

# IC=10.995 IC/col=0.250 n_of_columns=44

specificity:

A |  84   6   0  24  87   3  24  84  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  80   3  24  24   0   6   0
C |   6  84   0  24   3  88  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   6  24  24   0   3   0
G |   3   3   0  24   3   3  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   3   3  24  24  96  84   0
T |   3   3  96  24   3   2  24   3  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  10  84  24  24   0   3  96

scan!

home
updated Sun Dec 15 21:04:14 2024